Caltech RNA-seq Downloadable Files
  RNA-seq from ENCODE/Caltech   (Track settings)
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 571 files Cell Line Read
Type		 Insert
Length		 Treatment View Rep Lab Exp ID UCSC Accession GEO Accession Size File Type Submitted RESTRICTED
Until		 Additional Details
GM128781x75DNone  Plus Raw signal211010wgEncodeEH000125GSM958730 40 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6349; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UPlusRawRep2V4; md5sum=58c0ff926915396ed71ccfb3d417e888;
GM128781x75DNone  Plus Raw signal111011wgEncodeEH000125GSM958730 30 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6348; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UPlusRawRep1V4; md5sum=4478fcc2b27bca503c7259de48a997da;
GM128781x75DNone  Minus Raw signal211010wgEncodeEH000125GSM958730 40 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6349; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UMinusRawRep2V4; md5sum=7bc4828239ea17d7150170af857a7753;
GM128781x75DNone  Minus Raw signal111011wgEncodeEH000125GSM958730 30 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6348; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dTh1014UMinusRawRep1V4; md5sum=f37fa3493066587a50b17ffc394d32d7;
GM128781x75DNone  Splices211010wgEncodeEH000125GSM9587302.4 MBbam.bai2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3449; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dSplicesRep2V2; md5sum=c1a97a0db2d230ca4fad14fcdba5bc64;
GM128781x75DNone  Splices211010wgEncodeEH000125GSM958730237 MBbam2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3449; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dSplicesRep2V2; md5sum=26293fea65f5e28d1f460fca23661171;
GM128781x75DNone  Splices111011wgEncodeEH000125GSM9587302.3 MBbam.bai2010-01-042010-10-04localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3448; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dSplicesRep1V2; md5sum=7c42184af4a2fac5a468a0f9516b0d37;
GM128781x75DNone  Splices111011wgEncodeEH000125GSM958730196 MBbam2010-01-042010-10-04localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3448; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dSplicesRep1V2; md5sum=84e858ca0735e80e3f4d7849e9c090be;
GM128781x75DNone  Raw data211011wgEncodeEH000125GSM9587302.5 GBfastq2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-02-10; subId=1874; md5sum=5cd378ef1832aabfc8461dd1384514d3;
GM128781x75DNone  Raw data111011wgEncodeEH000125GSM9587301.4 GBfastq2010-01-042010-10-04localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-02-10; subId=1874; md5sum=2ff540ecbc946ff623948c01e89a85bd;
GM128781x75DNone  Alignments211010wgEncodeEH000125  4.0 MBbam.bai2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3449; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2; md5sum=e26326ddacc5ba5cdf9c8adc1966d727;
GM128781x75DNone  Alignments211010wgEncodeEH000125  1.2 GBbam2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3449; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2; md5sum=c25e4497f13790cfb1cb774af139f031;
GM128781x75DNone  Alignments111011wgEncodeEH000125  3.6 MBbam.bai2010-01-042010-10-04localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3448; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep1V2; md5sum=35c6c98b4fba7c6866dd70db77845edd;
GM128781x75DNone  Alignments111011wgEncodeEH000125  993 MBbam2010-01-042010-10-04localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3448; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep1V2; md5sum=b7d7d916256f7fbed062d62f8e638b0c;
GM128782x75200 base pairs  Signal210515wgEncodeEH000122GSM958728302 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6276; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il200SigRep2V4; md5sum=b3a79785ba671d9626b77ba107e61798;
GM128782x75200 base pairs  Signal110565wgEncodeEH000122GSM958728210 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6277; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il200SigRep1V4; md5sum=41464ad5a124820f3e2ebb1480cbbd55;
GM128782x75200 base pairs  Transcript Gencode V3c210515wgEncodeEH000122GSM958728 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3575; mapAlgorithm=TH1014; md5sum=458495d56ea98459e89901e42db8c7d3;
GM128782x75200 base pairs  Transcript Gencode V3c110565wgEncodeEH000122GSM958728 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3572; mapAlgorithm=TH1014; md5sum=8deacbcf99623d8ea677dcdb5bbc1dad;
GM128782x75200 base pairs  Transcripts De novo210515wgEncodeEH000122GSM9587284.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3575; mapAlgorithm=TH1014; md5sum=516d10d03988fbcdad17449127be395f;
GM128782x75200 base pairs  Transcripts De novo110565wgEncodeEH000122GSM9587284.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3572; mapAlgorithm=TH1014; md5sum=835816c2c44ab289492c392f93ae3793;
GM128782x75200 base pairs  TSS Gencode V3c210515wgEncodeEH000122GSM9587283.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3575; mapAlgorithm=TH1014; md5sum=c78567112e59917fe8bb96719b2c0777;
GM128782x75200 base pairs  TSS Gencode V3c110565wgEncodeEH000122GSM9587283.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3572; mapAlgorithm=TH1014; md5sum=7c0c92fb09ee3038bc951dfb54650878;
GM128782x75200 base pairs  Splices210515wgEncodeEH000122GSM9587282.8 MBbam.bai2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3463; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il200SplicesRep2V2; md5sum=70a696691bf788f1aeb7e14aad3722a6;
GM128782x75200 base pairs  Splices210515wgEncodeEH000122GSM9587281.3 GBbam2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3463; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il200SplicesRep2V2; md5sum=a6f8f785dc00bc13c5a56fb8330dcd6e;
GM128782x75200 base pairs  Splices110565wgEncodeEH000122GSM9587282.7 MBbam.bai2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3416; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il200SplicesRep1V2; md5sum=ab25fea607a09bfc0b0b3a9404176628;
GM128782x75200 base pairs  Splices110565wgEncodeEH000122GSM958728871 MBbam2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3416; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il200SplicesRep1V2; md5sum=bc50918b17b37c531facded3671a7c94;
GM128782x75200 base pairs  Junctions210515wgEncodeEH000122GSM9587286.4 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5234; mapAlgorithm=TH1014; md5sum=d4a6ca943cfdaaf36a2cc03c6f27255a;
GM128782x75200 base pairs  Junctions110565wgEncodeEH000122GSM9587285.8 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5279; mapAlgorithm=TH1014; md5sum=2a180edda48905e95310ea9851f65610;
GM128782x75200 base pairs  Genes Gencode V3c210515wgEncodeEH000122GSM9587281.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3575; mapAlgorithm=TH1014; md5sum=f7133ee0fad9f2a5f06510ef0a20b5bd;
GM128782x75200 base pairs  Genes Gencode V3c110565wgEncodeEH000122GSM9587281.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3572; mapAlgorithm=TH1014; md5sum=464eb5317f74fe716a2f40b3fe3f2cc4;
GM128782x75200 base pairs  Genes De Novo210515wgEncodeEH000122GSM9587281.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3575; mapAlgorithm=TH1014; md5sum=ddd6303d91b67a0ecac01a3fc3f6f668;
GM128782x75200 base pairs  Genes De Novo110565wgEncodeEH000122GSM9587281.0 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3572; mapAlgorithm=TH1014; md5sum=df152c461336398592d7fa83133a02dd;
GM128782x75200 base pairs  FastqRd2210515wgEncodeEH000122GSM9587288.2 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - corrected some bad quality scores in the previous version; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-07; subId=5136; md5sum=27ad1e247688c9e2842f87797058c278;
GM128782x75200 base pairs  FastqRd2110565wgEncodeEH000122GSM9587284.8 GBfastq.tgz2010-07-142011-04-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-06-21; subId=1647; md5sum=51c4d1679b0ad29888bea2b40e26364a;
GM128782x75200 base pairs  FastqRd1210515wgEncodeEH000122GSM9587288.2 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - corrected some bad quality scores in the previous version; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-07; subId=5121; md5sum=b524c34849b3cc7623bc624115fdf849;
GM128782x75200 base pairs  FastqRd1110565wgEncodeEH000122GSM9587284.7 GBfastq.tgz2010-07-142011-04-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-06-21; subId=1647; md5sum=6bb7caefd719fcc0c04422ec2b3beab9;
GM128782x75200 base pairs  Exons Gencode V3c210515wgEncodeEH000122GSM9587287.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3575; mapAlgorithm=TH1014; md5sum=33d5d464a6da68e31084a953bfa54d3a;
GM128782x75200 base pairs  Exons Gencode V3c110565wgEncodeEH000122GSM9587287.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3572; mapAlgorithm=TH1014; md5sum=e9ea28c09e56c9328d75eac9e58e29b7;
GM128782x75200 base pairs  Alignments210515wgEncodeEH000122  5.9 MBbam.bai2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3463; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il200AlignsRep2V2; md5sum=815b8a68fbea313bff7662bdd8fe1eab;
GM128782x75200 base pairs  Alignments210515wgEncodeEH000122  9.5 GBbam2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3463; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il200AlignsRep2V2; md5sum=4e211666eebc50fed6118e7bf373b0fe;
GM128782x75200 base pairs  Alignments110565wgEncodeEH000122  5.1 MBbam.bai2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3416; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il200AlignsRep1V2; md5sum=a1b43071f778488fda7582e1616723b6;
GM128782x75200 base pairs  Alignments110565wgEncodeEH000122  5.9 GBbam2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3416; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il200AlignsRep1V2; md5sum=30b867ee186936262528423c7d8fecd2;
GM128782x75400 base pairs  Signal210516wgEncodeEH000137GSM958742125 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6243; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Th1014Il400USigRep2V4; md5sum=640a798dc5b97be74bbb2c0f84d97311;
GM128782x75400 base pairs  Transcript Gencode V3c210516wgEncodeEH000137GSM958742 13 MBgtf2011-02-182011-11-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3532; mapAlgorithm=TH1014; md5sum=66a6bf88221afc958ea0ba2ccbd4a719;
GM128782x75400 base pairs  Transcripts De novo210516wgEncodeEH000137GSM9587423.5 MBgtf2011-02-182011-11-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3532; mapAlgorithm=TH1014; md5sum=be65f3e02d6d114e4210a5e6d13b8c2f;
GM128782x75400 base pairs  TSS Gencode V3c210516wgEncodeEH000137GSM9587422.9 MBgtf2011-02-182011-11-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3532; mapAlgorithm=TH1014; md5sum=16ecb91ad700e0e18583f8d3b212d44a;
GM128782x75400 base pairs  Splices210516wgEncodeEH000137GSM9587422.4 MBbam.bai2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3461; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il400SplicesRep2V2; md5sum=a35275ea9bd05227231c38d898ce995a;
GM128782x75400 base pairs  Splices210516wgEncodeEH000137GSM958742423 MBbam2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3461; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il400SplicesRep2V2; md5sum=5a1ed642ee3842aa3b4618d223fea4d2;
GM128782x75400 base pairs  Junctions210516wgEncodeEH000137GSM9587423.2 MBbigBed2011-02-182011-11-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5278; mapAlgorithm=TH1014; md5sum=b52b17e9aa4fc6634c694931a4a73870;
GM128782x75400 base pairs  Genes Gencode V3c210516wgEncodeEH000137GSM9587421.8 MBgtf2011-02-182011-11-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3532; mapAlgorithm=TH1014; md5sum=33484341537282222a9492797a49e82a;
GM128782x75400 base pairs  Genes De Novo210516wgEncodeEH000137GSM958742940 KBgtf2011-02-182011-11-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3532; mapAlgorithm=TH1014; md5sum=36ff265758ef436c460cd363725de257;
GM128782x75400 base pairs  FastqRd2210516wgEncodeEH000137GSM9587424.0 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - corrected some bad quality scores in the previous version; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-07; subId=5138; md5sum=78c19d5a5c0fc07d3734f62883b8016f;
GM128782x75400 base pairs  FastqRd1210516wgEncodeEH000137GSM9587423.9 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - corrected some bad quality scores in the previous version; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-07; subId=5137; md5sum=386850da051486879d75f676027040e6;
GM128782x75400 base pairs  Exons Gencode V3c210516wgEncodeEH000137GSM9587427.3 MBgtf2011-02-182011-11-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3532; mapAlgorithm=TH1014; md5sum=bb06f65243ff5bf3e16bcbe6349a2836;
GM128782x75400 base pairs  Alignments210516wgEncodeEH000137  4.5 MBbam.bai2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3461; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il400AlignsRep2V2; md5sum=b9d25e5856d5253f6d475b97cc89bb4e;
GM128782x75400 base pairs  Alignments210516wgEncodeEH000137  2.8 GBbam2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3461; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12878R2x75Il400AlignsRep2V2; md5sum=b795de6855f4a9a159fcd17ceb7d5901;
GM128912x75200 base pairs  Signal2SL2971wgEncodeEH001423GSM958747138 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6274; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Th1014Il200SigRep2V4; md5sum=28deb7e7f53c31807200320e1a710cf1;
GM128912x75200 base pairs  Signal111038wgEncodeEH001423GSM958747201 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6275; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Th1014Il200SigRep1V4; md5sum=6b36048e03b7e362fcb6d40b6555117f;
GM128912x75200 base pairs  Transcript Gencode V3c2SL2971wgEncodeEH001423GSM958747 13 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3665; mapAlgorithm=TH1014; md5sum=a99d9505f5503a5c3f8ae99c9008e9c6;
GM128912x75200 base pairs  Transcript Gencode V3c111038wgEncodeEH001423GSM958747 13 MBgtf2011-03-302011-12-29localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3576; mapAlgorithm=TH1014; md5sum=c07c96b550dc2134b1e02e3e1e67960a;
GM128912x75200 base pairs  Transcripts De novo2SL2971wgEncodeEH001423GSM9587474.3 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3665; mapAlgorithm=TH1014; md5sum=b7dad9d8354516e7bebd4fed29baf0a1;
GM128912x75200 base pairs  Transcripts De novo111038wgEncodeEH001423GSM9587474.5 MBgtf2011-03-302011-12-29localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3576; mapAlgorithm=TH1014; md5sum=0411b1e4ca819dcb3bc2b1944da41f3f;
GM128912x75200 base pairs  TSS Gencode V3c2SL2971wgEncodeEH001423GSM9587472.9 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3665; mapAlgorithm=TH1014; md5sum=6086ee0db8058ab90a5e3ae9f554f413;
GM128912x75200 base pairs  TSS Gencode V3c111038wgEncodeEH001423GSM9587473.0 MBgtf2011-03-302011-12-29localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3576; mapAlgorithm=TH1014; md5sum=7d6fb7764b1903f06c890935a7b9225c;
GM128912x75200 base pairs  Splices2SL2971wgEncodeEH001423GSM9587472.4 MBbam.bai2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3437; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Il200SplicesRep2V2; md5sum=b133850585aaa3435fd33ff0a8ed9e9c;
GM128912x75200 base pairs  Splices2SL2971wgEncodeEH001423GSM958747309 MBbam2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3437; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Il200SplicesRep2V2; md5sum=d38a684b10152d9bd28388232be48f44;
GM128912x75200 base pairs  Splices111038wgEncodeEH001423GSM9587472.7 MBbam.bai2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3436; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Il200SplicesRep1V2; md5sum=4db2f15ef0a74ac054341164664e6d21;
GM128912x75200 base pairs  Splices111038wgEncodeEH001423GSM958747919 MBbam2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3436; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Il200SplicesRep1V2; md5sum=76bf6fcbc697c870e2871ea7724dfae7;
GM128912x75200 base pairs  Junctions2SL2971wgEncodeEH001423GSM9587473.3 MBbigBed2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5280; mapAlgorithm=TH1014; md5sum=b9b99d291907f4cc40d887a9f3577c34;
GM128912x75200 base pairs  Junctions111038wgEncodeEH001423GSM9587473.2 MBbigBed2011-03-302011-12-29localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5281; mapAlgorithm=TH1014; md5sum=e3647a3f628e18ccfb79db6a94bbb38f;
GM128912x75200 base pairs  Genes Gencode V3c2SL2971wgEncodeEH001423GSM9587471.9 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3665; mapAlgorithm=TH1014; md5sum=02a0ee3742bea583079a5beb93412f5e;
GM128912x75200 base pairs  Genes Gencode V3c111038wgEncodeEH001423GSM9587471.9 MBgtf2011-03-302011-12-29localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3576; mapAlgorithm=TH1014; md5sum=8e8889ff6bce358b255dd565af7932d7;
GM128912x75200 base pairs  Genes De Novo2SL2971wgEncodeEH001423GSM9587471.2 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3665; mapAlgorithm=TH1014; md5sum=24757a64ea5c65f871cf06607c68a4a7;
GM128912x75200 base pairs  Genes De Novo111038wgEncodeEH001423GSM9587471.1 MBgtf2011-03-302011-12-29localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3576; mapAlgorithm=TH1014; md5sum=151187a5de7feca4f734a1a5cf284bfe;
GM128912x75200 base pairs  FastqRd2202971wgEncodeEH001423GSM9587472.0 GBfastq2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - Removed unexpected read indicator before /; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-07-27; subId=7722; labVersion=02971; md5sum=7fdee384087bc4dfb129280035dcf644;
GM128912x75200 base pairs  FastqRd22SL2971wgEncodeEH001423GSM9587472.1 GBfastq2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=4609; labVersion=02971; md5sum=7ba263090dc325d5422abd68fb363561;
GM128912x75200 base pairs  FastqRd2111038wgEncodeEH001423GSM9587473.9 GBfastq.tgz2011-01-212011-10-21localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=3436; md5sum=cb57a6acca676e312a685df149895bc5;
GM128912x75200 base pairs  FastqRd1202971wgEncodeEH001423GSM9587471.6 GBfastq2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - Removed unexpected read indicator before /; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-07-27; subId=7722; labVersion=02971; md5sum=ddbfc402fb4be9a491adc4e0d0962899;
GM128912x75200 base pairs  FastqRd1111038wgEncodeEH001423GSM9587473.6 GBfastq.tgz2011-01-212011-10-21localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=3436; md5sum=80c729c4dc51d999b29f160fc0c3c0ed;
GM128912x75200 base pairs  Exons Gencode V3c2SL2971wgEncodeEH001423GSM9587477.4 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3665; mapAlgorithm=TH1014; md5sum=7aa897ff9b78d05ed1b796ca55061a03;
GM128912x75200 base pairs  Exons Gencode V3c111038wgEncodeEH001423GSM9587477.5 MBgtf2011-03-302011-12-29localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3576; mapAlgorithm=TH1014; md5sum=622c09da744abb1593af2efcd06c3a38;
GM128912x75200 base pairs  Alignments2SL2971wgEncodeEH001423  4.7 MBbam.bai2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3437; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Il200AlignsRep2V2; md5sum=7393bcc9e383ce072fbce4576db02736;
GM128912x75200 base pairs  Alignments2SL2971wgEncodeEH001423  2.5 GBbam2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3437; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Il200AlignsRep2V2; md5sum=b42c65ab6d04eb1000d2eb08987a9056;
GM128912x75200 base pairs  Alignments111038wgEncodeEH001423  5.4 MBbam.bai2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3436; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Il200AlignsRep1V2; md5sum=dfd1c803afacdafd96d42e73ee0b0479;
GM128912x75200 base pairs  Alignments111038wgEncodeEH001423  6.5 GBbam2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3436; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12891R2x75Il200AlignsRep1V2; md5sum=8601206e648441dea06b536b97381871;
GM128922x75200 base pairs  Signal3SL2973wgEncodeEH001424GSM958748161 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6271; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Th1014Il200SigRep3V4; md5sum=6092c8311a0a1eff2301d2d5b39428bf;
GM128922x75200 base pairs  Signal2SL2970wgEncodeEH001424GSM958748150 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6272; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Th1014Il200SigRep2V4; md5sum=d53fc33946e709ec193ef5b706fe166d;
GM128922x75200 base pairs  Signal111039wgEncodeEH001424GSM958748199 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6273; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Th1014Il200SigRep1V4; md5sum=9a6917f13d90cdf628d2b505cb5161fa;
GM128922x75200 base pairs  Transcript Gencode V3c3SL2973wgEncodeEH001424GSM958748 13 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3744; mapAlgorithm=TH1014; md5sum=6afb939b3589e90afadf56f6ae01ddcf;
GM128922x75200 base pairs  Transcript Gencode V3c2SL2970wgEncodeEH001424GSM958748 13 MBgtf2011-03-172011-12-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3666; mapAlgorithm=TH1014; md5sum=b52f71203d9f43a63161bea1324c2bd5;
GM128922x75200 base pairs  Transcript Gencode V3c111039wgEncodeEH001424GSM958748 13 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3577; mapAlgorithm=TH1014; md5sum=81751f3bb56ca2c1cde24748d125bbe0;
GM128922x75200 base pairs  Transcripts De novo3SL2973wgEncodeEH001424GSM9587485.1 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3744; mapAlgorithm=TH1014; md5sum=da7c75eeaf1c6f00f858bedf948da344;
GM128922x75200 base pairs  Transcripts De novo2SL2970wgEncodeEH001424GSM9587484.4 MBgtf2011-03-172011-12-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3666; mapAlgorithm=TH1014; md5sum=14b8ed2239bc35f6d94f13d83e6d1ed1;
GM128922x75200 base pairs  Transcripts De novo111039wgEncodeEH001424GSM9587484.1 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3577; mapAlgorithm=TH1014; md5sum=7520bfc7a2f20bd4c697ac823e2a6ba4;
GM128922x75200 base pairs  TSS Gencode V3c3SL2973wgEncodeEH001424GSM9587482.9 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3744; mapAlgorithm=TH1014; md5sum=20984e2a00a4c29008e35f1fab4e2b03;
GM128922x75200 base pairs  TSS Gencode V3c2SL2970wgEncodeEH001424GSM9587482.9 MBgtf2011-03-172011-12-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3666; mapAlgorithm=TH1014; md5sum=9b60fdf3305376edd454cb97de78f2f1;
GM128922x75200 base pairs  TSS Gencode V3c111039wgEncodeEH001424GSM9587482.9 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3577; mapAlgorithm=TH1014; md5sum=d48c021246447f5cc3156826c4acade3;
GM128922x75200 base pairs  Splices3SL2973wgEncodeEH001424GSM9587482.5 MBbam.bai2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3439; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep3V2; md5sum=41849a151ca64734fc52b0fdf769c3ac;
GM128922x75200 base pairs  Splices3SL2973wgEncodeEH001424GSM958748338 MBbam2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3439; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep3V2; md5sum=95b2c965412f7a1cd35f99e0bba4d3c2;
GM128922x75200 base pairs  Splices2SL2970wgEncodeEH001424GSM9587482.5 MBbam.bai2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3438; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep2V2; md5sum=5f8338829a1e4cf57c3bf1c05bc676a6;
GM128922x75200 base pairs  Splices2SL2970wgEncodeEH001424GSM958748352 MBbam2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3438; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep2V2; md5sum=6f2488d7085d8c13573bce2014dd35ca;
GM128922x75200 base pairs  Splices111039wgEncodeEH001424GSM9587482.6 MBbam.bai2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3441; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep1V2; md5sum=b7bff76e55856b32e36eebf2fde4361c;
GM128922x75200 base pairs  Splices111039wgEncodeEH001424GSM958748757 MBbam2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3441; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200SplicesRep1V2; md5sum=b8a1fdf2698376e417dc1a904188fc39;
GM128922x75200 base pairs  Junctions3SL2973wgEncodeEH001424GSM9587483.3 MBbigBed2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5283; mapAlgorithm=TH1014; md5sum=0868d79025e6cd8879fa42cd760bc316;
GM128922x75200 base pairs  Junctions2SL2970wgEncodeEH001424GSM9587483.4 MBbigBed2011-03-172011-12-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5282; mapAlgorithm=TH1014; md5sum=32822e771a2f1f6cc654ee67d81fdd5f;
GM128922x75200 base pairs  Junctions111039wgEncodeEH001424GSM9587484.1 MBbigBed2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5284; mapAlgorithm=TH1014; md5sum=ece996243adc23bc7ed5b9e849ddd406;
GM128922x75200 base pairs  Genes Gencode V3c3SL2973wgEncodeEH001424GSM9587481.9 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3744; mapAlgorithm=TH1014; md5sum=5625be74467636618e7c53be64a6d97d;
GM128922x75200 base pairs  Genes Gencode V3c2SL2970wgEncodeEH001424GSM9587481.9 MBgtf2011-03-172011-12-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3666; mapAlgorithm=TH1014; md5sum=fc1f369ccfae49bbaafad828e09c1d68;
GM128922x75200 base pairs  Genes Gencode V3c111039wgEncodeEH001424GSM9587481.9 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3577; mapAlgorithm=TH1014; md5sum=32c468ab639fd1e042dd5ee34878f3d6;
GM128922x75200 base pairs  Genes De Novo3SL2973wgEncodeEH001424GSM9587481.6 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3744; mapAlgorithm=TH1014; md5sum=5757f581776759f734d89bd4a60da5f2;
GM128922x75200 base pairs  Genes De Novo2SL2970wgEncodeEH001424GSM9587481.2 MBgtf2011-03-172011-12-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3666; mapAlgorithm=TH1014; md5sum=239afed59f7f1eff0f8e644e32d7d7fa;
GM128922x75200 base pairs  Genes De Novo111039wgEncodeEH001424GSM958748932 KBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3577; mapAlgorithm=TH1014; md5sum=dd3aa911617e46c0cfe7dfc4f7216367;
GM128922x75200 base pairs  FastqRd2302973wgEncodeEH001424GSM9587482.5 GBfastq2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - Removed unexpected read indicator before /; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-07-27; subId=7724; labVersion=02973; md5sum=35d3b59e962fb365c9c0239154ced940;
GM128922x75200 base pairs  FastqRd23SL2973wgEncodeEH001424GSM9587482.5 GBfastq2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=4608; labVersion=02973; md5sum=c94978a1b5d2846e38b4521b8a029602;
GM128922x75200 base pairs  FastqRd2202970wgEncodeEH001424GSM9587482.3 GBfastq2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - Removed unexpected read indicator before /; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-07-27; subId=7723; labVersion=02970; md5sum=99f101b7e3304419e971ca069d538855;
GM128922x75200 base pairs  FastqRd22SL2970wgEncodeEH001424GSM9587482.4 GBfastq2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=4607; labVersion=02970; md5sum=1ed64d59246ea4bd66c8cc1598744d93;
GM128922x75200 base pairs  FastqRd2111039wgEncodeEH001424GSM9587483.7 GBfastq.tgz2011-01-212011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - Removed 424 unpaired reads from fastq files; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-07-26; subId=7705; md5sum=3a6446afbd642fd320c2bac7b61268db;
GM128922x75200 base pairs  FastqRd2111039wgEncodeEH001424GSM9587483.7 GBfastq.tgz2011-01-212011-10-21localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=3441; md5sum=d20a75deb7ac79d1436c6ef092af6c9f;
GM128922x75200 base pairs  FastqRd1302973wgEncodeEH001424GSM9587481.9 GBfastq2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - Removed unexpected read indicator before /; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-07-27; subId=7724; labVersion=02973; md5sum=1d4950bb36aa09738ae6dc9d541e280c;
GM128922x75200 base pairs  FastqRd1202970wgEncodeEH001424GSM9587481.8 GBfastq2011-03-142011-12-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - Removed unexpected read indicator before /; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-07-27; subId=7723; labVersion=02970; md5sum=9a78fe7a1607d9485ad713a934dc6671;
GM128922x75200 base pairs  FastqRd1111039wgEncodeEH001424GSM9587483.6 GBfastq.tgz2011-01-212011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - Removed 424 unpaired reads from fastq files; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-07-26; subId=7705; md5sum=ca1931b862c414f1d7f84435e0f4cedc;
GM128922x75200 base pairs  Exons Gencode V3c3SL2973wgEncodeEH001424GSM9587487.4 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3744; mapAlgorithm=TH1014; md5sum=448e6b34a1642b1c739310634b225a1b;
GM128922x75200 base pairs  Exons Gencode V3c2SL2970wgEncodeEH001424GSM9587487.5 MBgtf2011-03-172011-12-17localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3666; mapAlgorithm=TH1014; md5sum=09d4c85fc89de3d3880ea4c5f06e106a;
GM128922x75200 base pairs  Exons Gencode V3c111039wgEncodeEH001424GSM9587487.5 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3577; mapAlgorithm=TH1014; md5sum=a39560ea5caeeebf2a106d5e4c17c6df;
GM128922x75200 base pairs  Alignments3SL2973wgEncodeEH001424  5.0 MBbam.bai2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3439; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep3V2; md5sum=316c25d160c62cd4eb714a2a96c37b0c;
GM128922x75200 base pairs  Alignments3SL2973wgEncodeEH001424  3.1 GBbam2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3439; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep3V2; md5sum=e95070c17ae3c7da4ebb738023edba25;
GM128922x75200 base pairs  Alignments2SL2970wgEncodeEH001424  4.7 MBbam.bai2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3438; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep2V2; md5sum=79b7a9b00dc17c9dfd17fd6b7c2c3f9b;
GM128922x75200 base pairs  Alignments2SL2970wgEncodeEH001424  2.9 GBbam2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3438; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep2V2; md5sum=f462987ea29143a367c71750afe06bb1;
GM128922x75200 base pairs  Alignments111039wgEncodeEH001424  5.3 MBbam.bai2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3441; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep1V2; md5sum=a07562587f280f070de050099db4197a;
GM128922x75200 base pairs  Alignments111039wgEncodeEH001424  5.8 GBbam2011-01-182011-10-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping; dataVersion=ENCODE Jan 2011 Freeze; subId=3441; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqGm12892R2x75Il200AlignsRep1V2; md5sum=b875bc2403e407855e14f8307b3689e6;
H1-hESC1x75DNone  Plus Raw signal211009wgEncodeEH000132GSM958737 42 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6351; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep2V4; md5sum=5eca011ec0a4675e87273ac1bb85a5d4;
H1-hESC1x75DNone  Plus Raw signal110947wgEncodeEH000132GSM958737 26 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6350; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UPlusRawRep1V4; md5sum=f046924bcc462e7868950f5fb456a17c;
H1-hESC1x75DNone  Minus Raw signal211009wgEncodeEH000132GSM958737 41 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6351; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep2V4; md5sum=09dffde3daa4dd3138de4e3a689d4924;
H1-hESC1x75DNone  Minus Raw signal110947wgEncodeEH000132GSM958737 29 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6350; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dTh1014UMinusRawRep1V4; md5sum=d84ab9fdb76a8796b9a9b990007dc86b;
H1-hESC1x75DNone  Splices211009wgEncodeEH000132GSM9587372.5 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3451; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep2V2; md5sum=f76674c4442cd6e2257de211722328ea;
H1-hESC1x75DNone  Splices211009wgEncodeEH000132GSM958737316 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3451; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep2V2; md5sum=aa23f6e532a6adbc9536a487066670ab;
H1-hESC1x75DNone  Splices110947wgEncodeEH000132GSM9587372.3 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3450; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep1V2; md5sum=287adc76cbc7aad9e9bb5c518718bcf9;
H1-hESC1x75DNone  Splices110947wgEncodeEH000132GSM958737177 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3450; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dSplicesRep1V2; md5sum=4cf4b19a3e4465dbea1f51a8216fbd95;
H1-hESC1x75DNone  Raw data211009wgEncodeEH000132GSM9587372.3 GBfastq2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-01-14; subId=1874; md5sum=f8d7f1c78cd33a55e5308b01b9384056;
H1-hESC1x75DNone  Raw data110947wgEncodeEH000132GSM9587371.3 GBfastq2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1633; md5sum=0b3c5c07b5ac34bb961b441745dbc6e8;
H1-hESC1x75DNone  Alignments211009wgEncodeEH000132  4.5 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3451; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dAlignsRep2V2; md5sum=90696c2bc33fe1f8cf3c8a23e9638e0c;
H1-hESC1x75DNone  Alignments211009wgEncodeEH000132  1.6 GBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3451; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dAlignsRep2V2; md5sum=401e74ccbcd897e7d9dd702ef2e2a8ce;
H1-hESC1x75DNone  Alignments110947wgEncodeEH000132  4.0 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3450; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dAlignsRep1V2; md5sum=251d27bada4a0dd496cb95fe088398fa;
H1-hESC1x75DNone  Alignments110947wgEncodeEH000132  890 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3450; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR1x75dAlignsRep1V2; md5sum=3c6b6a7da491d4a6a9460bf78d20dc4e;
H1-hESC2x75200 base pairs  Signal410874wgEncodeEH000128GSM958733159 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6266; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep4V4; md5sum=cfecf521e746be262c060d5254d0a9e9;
H1-hESC2x75200 base pairs  Signal311289wgEncodeEH000128GSM958733181 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6267; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep3V4; md5sum=16f749045acd1c4506153016d8eadd68;
H1-hESC2x75200 base pairs  Signal211288wgEncodeEH000128GSM958733183 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6268; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep2V4; md5sum=96affc7571a63ebe43310e084ef99ede;
H1-hESC2x75200 base pairs  Signal111286wgEncodeEH000128GSM958733182 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6269; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il200SigRep1V4; md5sum=b3446f00d2f8a30106e58f355c319a6d;
H1-hESC2x75200 base pairs  Transcript Gencode V3c410874wgEncodeEH000128GSM958733 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3581; mapAlgorithm=TH1014; md5sum=d40d77d4bdd953a22de9bf48d247eeeb;
H1-hESC2x75200 base pairs  Transcript Gencode V3c311289wgEncodeEH000128GSM958733 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3580; mapAlgorithm=TH1014; md5sum=87cf50a54d7fb960f117db2950fb5f04;
H1-hESC2x75200 base pairs  Transcript Gencode V3c211288wgEncodeEH000128GSM958733 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3579; mapAlgorithm=TH1014; md5sum=eba7c1ff6afbed007dc609a12dc52b04;
H1-hESC2x75200 base pairs  Transcript Gencode V3c111286wgEncodeEH000128GSM958733 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3578; mapAlgorithm=TH1014; md5sum=ef635317d76049af656dfb5b868c5b50;
H1-hESC2x75200 base pairs  Transcripts De novo410874wgEncodeEH000128GSM9587334.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3581; mapAlgorithm=TH1014; md5sum=f600becf0c7fa2fef0feb2517a2ba002;
H1-hESC2x75200 base pairs  Transcripts De novo311289wgEncodeEH000128GSM9587334.5 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3580; mapAlgorithm=TH1014; md5sum=90a896c3f16049132e75cd9e7942f1f0;
H1-hESC2x75200 base pairs  Transcripts De novo211288wgEncodeEH000128GSM9587334.6 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3579; mapAlgorithm=TH1014; md5sum=a5a08242ed5d093aaf562e180eabc958;
H1-hESC2x75200 base pairs  Transcripts De novo111286wgEncodeEH000128GSM9587334.5 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3578; mapAlgorithm=TH1014; md5sum=0f74f62b29d6416b825df5f94a41c764;
H1-hESC2x75200 base pairs  TSS Gencode V3c410874wgEncodeEH000128GSM9587333.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3581; mapAlgorithm=TH1014; md5sum=cdecb80b9941704158da0f124e5ca267;
H1-hESC2x75200 base pairs  TSS Gencode V3c311289wgEncodeEH000128GSM9587333.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3580; mapAlgorithm=TH1014; md5sum=ee14787e2ee0eb074f2864b26a9402fa;
H1-hESC2x75200 base pairs  TSS Gencode V3c211288wgEncodeEH000128GSM9587333.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3579; mapAlgorithm=TH1014; md5sum=57ea40f71ae0c22b80ba63da64e31766;
H1-hESC2x75200 base pairs  TSS Gencode V3c111286wgEncodeEH000128GSM9587333.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3578; mapAlgorithm=TH1014; md5sum=d66bd9922dcbc803610698539e6585b4;
H1-hESC2x75200 base pairs  Splices410874wgEncodeEH000128GSM9587332.7 MBbam.bai2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3410; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep4V2; md5sum=b188968da362e01582a3b653afc90197;
H1-hESC2x75200 base pairs  Splices410874wgEncodeEH000128GSM958733557 MBbam2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3410; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep4V2; md5sum=bfede33e27558171bc6e11e116225bd8;
H1-hESC2x75200 base pairs  Splices311289wgEncodeEH000128GSM9587332.7 MBbam.bai2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3417; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep3V2; md5sum=e491e48dfc95dc9a77cddb9e41e89018;
H1-hESC2x75200 base pairs  Splices311289wgEncodeEH000128GSM958733773 MBbam2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3417; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep3V2; md5sum=f37195b52920dd494edb4a053f39db69;
H1-hESC2x75200 base pairs  Splices211288wgEncodeEH000128GSM9587332.7 MBbam.bai2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3409; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep2V2; md5sum=897b1463a269c34a7b7a7c877e4bd74c;
H1-hESC2x75200 base pairs  Splices211288wgEncodeEH000128GSM958733797 MBbam2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3409; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep2V2; md5sum=9639b934c03483ed79225c0a922598f0;
H1-hESC2x75200 base pairs  Splices111286wgEncodeEH000128GSM9587332.7 MBbam.bai2010-01-132010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3464; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep1V2; md5sum=034616f0c3d4dfbca402a366a023e643;
H1-hESC2x75200 base pairs  Splices111286wgEncodeEH000128GSM958733786 MBbam2010-01-132010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3464; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200SplicesRep1V2; md5sum=1d5de812ce6da76d0930148451c9df7c;
H1-hESC2x75200 base pairs  Junctions410874wgEncodeEH000128GSM9587334.3 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5285; mapAlgorithm=TH1014; md5sum=fef6bda7c28bf0cd7b96c8088f1ff4b3;
H1-hESC2x75200 base pairs  Junctions311289wgEncodeEH000128GSM9587334.6 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5289; mapAlgorithm=TH1014; md5sum=4e9b0ec625c97977ab13ca59b716930c;
H1-hESC2x75200 base pairs  Junctions211288wgEncodeEH000128GSM9587334.6 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5288; mapAlgorithm=TH1014; md5sum=708422662919413bc6eb3c96d46cb948;
H1-hESC2x75200 base pairs  Junctions111286wgEncodeEH000128GSM9587334.6 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5287; mapAlgorithm=TH1014; md5sum=c7f639ebcc758267d8b9715ca735001c;
H1-hESC2x75200 base pairs  Genes Gencode V3c410874wgEncodeEH000128GSM9587331.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3581; mapAlgorithm=TH1014; md5sum=294cc526433c34406500b57803cb9b67;
H1-hESC2x75200 base pairs  Genes Gencode V3c311289wgEncodeEH000128GSM9587331.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3580; mapAlgorithm=TH1014; md5sum=f768ed23c1f0849b108d10fe107d7ff7;
H1-hESC2x75200 base pairs  Genes Gencode V3c211288wgEncodeEH000128GSM9587331.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3579; mapAlgorithm=TH1014; md5sum=4ad2a3d3245710d87ee268521dbc9c5c;
H1-hESC2x75200 base pairs  Genes Gencode V3c111286wgEncodeEH000128GSM9587331.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3578; mapAlgorithm=TH1014; md5sum=b3cc1b65f392eb1dc1547b3eccfa13be;
H1-hESC2x75200 base pairs  Genes De Novo410874wgEncodeEH000128GSM958733986 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3581; mapAlgorithm=TH1014; md5sum=48fa2b8532590db61eecc5ce6ba7dfc1;
H1-hESC2x75200 base pairs  Genes De Novo311289wgEncodeEH000128GSM9587331.0 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3580; mapAlgorithm=TH1014; md5sum=dcbcf4566331459349abde79e40fa53c;
H1-hESC2x75200 base pairs  Genes De Novo211288wgEncodeEH000128GSM9587331.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3579; mapAlgorithm=TH1014; md5sum=9f473801a82be23a7db0e23764021d2b;
H1-hESC2x75200 base pairs  Genes De Novo111286wgEncodeEH000128GSM9587331.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3578; mapAlgorithm=TH1014; md5sum=3f278534f058b8131f0d53a6c10beca9;
H1-hESC2x75200 base pairs  FastqRd2410874wgEncodeEH000128GSM9587333.1 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-15; subId=1666; md5sum=255330a0214525aa1da4b656f25d7421;
H1-hESC2x75200 base pairs  FastqRd2311289wgEncodeEH000128GSM9587333.2 GBfastq.tgz2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1667; md5sum=1e57b7fa9dcdaf326ffa5af00eca65d5;
H1-hESC2x75200 base pairs  FastqRd2211288wgEncodeEH000128GSM9587333.3 GBfastq.tgz2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1668; md5sum=0d28ecd7d3b692cee9b5143a44cfde30;
H1-hESC2x75200 base pairs  FastqRd2111286wgEncodeEH000128GSM9587333.2 GBfastq.tgz2010-01-132010-10-13localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1670; md5sum=c51771a4f8db428f15c7a88c43efd254;
H1-hESC2x75200 base pairs  FastqRd1410874wgEncodeEH000128GSM9587333.1 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-15; subId=1666; md5sum=0e7cce805f1d78c50c4a7f1e1485decf;
H1-hESC2x75200 base pairs  FastqRd1311289wgEncodeEH000128GSM9587333.2 GBfastq.tgz2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1667; md5sum=895e5173c69c92db7c41d9d84858dc84;
H1-hESC2x75200 base pairs  FastqRd1211288wgEncodeEH000128GSM9587333.2 GBfastq.tgz2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1668; md5sum=486ac5301a47ab617ebaf0cf9fc841a5;
H1-hESC2x75200 base pairs  FastqRd1111286wgEncodeEH000128GSM9587333.1 GBfastq.tgz2010-01-132010-10-13localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1670; md5sum=618f5ee048b9f2abe7e2e8e0a96e7b61;
H1-hESC2x75200 base pairs  Exons Gencode V3c410874wgEncodeEH000128GSM9587337.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3581; mapAlgorithm=TH1014; md5sum=78d23cd1deb7b2b6b0f4f77fb6f88f5d;
H1-hESC2x75200 base pairs  Exons Gencode V3c311289wgEncodeEH000128GSM9587337.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3580; mapAlgorithm=TH1014; md5sum=c6c4852d82f1b2e83733c918c8f60e0e;
H1-hESC2x75200 base pairs  Exons Gencode V3c211288wgEncodeEH000128GSM9587337.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3579; mapAlgorithm=TH1014; md5sum=21d698ca5ec81cd7951f23690134871e;
H1-hESC2x75200 base pairs  Exons Gencode V3c111286wgEncodeEH000128GSM9587337.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3578; mapAlgorithm=TH1014; md5sum=c71ebbad790070b73af53e3bf15b3da2;
H1-hESC2x75200 base pairs  Alignments410874wgEncodeEH000128  4.9 MBbam.bai2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3410; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep4V2; md5sum=ab082addc7ebb47572f6bc7cb538bbc7;
H1-hESC2x75200 base pairs  Alignments410874wgEncodeEH000128  3.5 GBbam2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3410; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep4V2; md5sum=4e0a69e803e9a920c988f7bce1553a77;
H1-hESC2x75200 base pairs  Alignments311289wgEncodeEH000128  5.0 MBbam.bai2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3417; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep3V2; md5sum=04b24bf40443c952e45bfb8bbaf86540;
H1-hESC2x75200 base pairs  Alignments311289wgEncodeEH000128  4.6 GBbam2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3417; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep3V2; md5sum=e776b497549eb6c7757516fadc29c3b3;
H1-hESC2x75200 base pairs  Alignments211288wgEncodeEH000128  5.0 MBbam.bai2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3409; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep2V2; md5sum=6efe87b2c66bb0a28eb15266c7ea2139;
H1-hESC2x75200 base pairs  Alignments211288wgEncodeEH000128  4.7 GBbam2010-01-142010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3409; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep2V2; md5sum=a410a257d7a6ebeb3673e2531934e375;
H1-hESC2x75200 base pairs  Alignments111286wgEncodeEH000128  4.9 MBbam.bai2010-01-132010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3464; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep1V2; md5sum=1f4f91ad9b262e5407c0e194296a6163;
H1-hESC2x75200 base pairs  Alignments111286wgEncodeEH000128  4.6 GBbam2010-01-132010-10-13localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3464; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il200AlignsRep1V2; md5sum=c98813c9577fa37418f1ae5841964162;
H1-hESC2x75400 base pairs  Signal110876wgEncodeEH000138GSM958743115 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6278; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Th1014Il400SigRep1V4; md5sum=3cab3f7690217ffbfcde842ffd61e5cc;
H1-hESC2x75400 base pairs  Transcript Gencode V3c110876wgEncodeEH000138GSM958743 13 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3571; mapAlgorithm=TH1014; md5sum=1b41b37d6b84478e362458cdfe98637b;
H1-hESC2x75400 base pairs  Transcripts De novo110876wgEncodeEH000138GSM9587433.4 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3571; mapAlgorithm=TH1014; md5sum=71a915b089c18abac20d63f3ba2a1064;
H1-hESC2x75400 base pairs  TSS Gencode V3c110876wgEncodeEH000138GSM9587432.9 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3571; mapAlgorithm=TH1014; md5sum=8125aebab9f97d2f2183ff2fc4c0ea02;
H1-hESC2x75400 base pairs  Splices110876wgEncodeEH000138GSM9587432.5 MBbam.bai2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-01-22; subId=3462; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il400SplicesRep1V2; md5sum=edd57aa8b3c501b6ac3a01f1da318e40;
H1-hESC2x75400 base pairs  Splices110876wgEncodeEH000138GSM958743592 MBbam2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-01-22; subId=3462; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il400SplicesRep1V2; md5sum=bd17b339a2bee1732bc56cbeb38e3861;
H1-hESC2x75400 base pairs  Junctions110876wgEncodeEH000138GSM9587433.4 MBbigBed2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5286; mapAlgorithm=TH1014; md5sum=420514f14d4c47dc00c75832d348f446;
H1-hESC2x75400 base pairs  Genes Gencode V3c110876wgEncodeEH000138GSM9587431.9 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3571; mapAlgorithm=TH1014; md5sum=80da1eaec7237dab5aef4da84830359b;
H1-hESC2x75400 base pairs  Genes De Novo110876wgEncodeEH000138GSM958743935 KBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3571; mapAlgorithm=TH1014; md5sum=27e254a0d43d8adf39f259822d03d9bd;
H1-hESC2x75400 base pairs  FastqRd2110876wgEncodeEH000138GSM9587433.1 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1669; md5sum=2053e9573bbabb24de68da503dc41e72;
H1-hESC2x75400 base pairs  FastqRd1110876wgEncodeEH000138GSM9587433.5 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1669; md5sum=22165a6c61f8cd4b5486da759e3ad9be;
H1-hESC2x75400 base pairs  Exons Gencode V3c110876wgEncodeEH000138GSM9587437.4 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3571; mapAlgorithm=TH1014; md5sum=33138384cdae36e64d571c15c02d7462;
H1-hESC2x75400 base pairs  Alignments110876wgEncodeEH000138  4.2 MBbam.bai2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-01-22; subId=3462; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il400AlignsRep1V2; md5sum=de83149535d75004e32a898fa1b18832;
H1-hESC2x75400 base pairs  Alignments110876wgEncodeEH000138  3.7 GBbam2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-01-22; subId=3462; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqH1hescR2x75Il400AlignsRep1V2; md5sum=66abda0e9463837f62084fb7db7f2039;
HCT-1162x75200 base pairs  Signal212097wgEncodeEH001425GSM958749226 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6264; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Th1014Il200SigRep2V4; md5sum=744e69bf87bcac918f08b7bec40d89db;
HCT-1162x75200 base pairs  Signal112096wgEncodeEH001425GSM958749186 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6265; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Th1014Il200SigRep1V4; md5sum=605c379cee663c1e75fdc882a9cd6dca;
HCT-1162x75200 base pairs  Transcript Gencode V3c212097wgEncodeEH001425GSM958749 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3583; mapAlgorithm=TH1014; md5sum=8486af5dc1dc200cb39ad5b2b5ec5a67;
HCT-1162x75200 base pairs  Transcript Gencode V3c112096wgEncodeEH001425GSM958749 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3582; mapAlgorithm=TH1014; md5sum=a6113756afa64acd21d081e74569bac5;
HCT-1162x75200 base pairs  Transcripts De novo212097wgEncodeEH001425GSM9587495.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3583; mapAlgorithm=TH1014; md5sum=a16772603e298f0b59e40b849939a173;
HCT-1162x75200 base pairs  Transcripts De novo112096wgEncodeEH001425GSM9587495.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3582; mapAlgorithm=TH1014; md5sum=e8b7053889cb74b52163d39666e0fb2b;
HCT-1162x75200 base pairs  TSS Gencode V3c212097wgEncodeEH001425GSM9587493.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3583; mapAlgorithm=TH1014; md5sum=b724895c48d167025527f04c483b10c1;
HCT-1162x75200 base pairs  TSS Gencode V3c112096wgEncodeEH001425GSM9587493.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3582; mapAlgorithm=TH1014; md5sum=c89c6c15ba4079d5e4d208789a47c2f7;
HCT-1162x75200 base pairs  Splices212097wgEncodeEH001425GSM9587492.8 MBbam.bai2011-02-122011-11-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3475; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Il200SplicesRep2V2; md5sum=d67a8c0dab93beff7950d5c70edf704a;
HCT-1162x75200 base pairs  Splices212097wgEncodeEH001425GSM9587491.7 GBbam2011-02-122011-11-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3475; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Il200SplicesRep2V2; md5sum=d5c96023912ae5f31817fbfca973e9c0;
HCT-1162x75200 base pairs  Splices112096wgEncodeEH001425GSM9587492.7 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3474; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Il200SplicesRep1V2; md5sum=d679189fca4886cec38d21f75ee99baf;
HCT-1162x75200 base pairs  Splices112096wgEncodeEH001425GSM9587491.7 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3474; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Il200SplicesRep1V2; md5sum=b1c98e599d3267d3fc180d398e39b9b0;
HCT-1162x75200 base pairs  Junctions212097wgEncodeEH001425GSM9587496.2 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5291; mapAlgorithm=TH1014; md5sum=0a1bd930f6423e5f800e308a2bee937a;
HCT-1162x75200 base pairs  Junctions112096wgEncodeEH001425GSM9587495.8 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5290; mapAlgorithm=TH1014; md5sum=ef081675a442b1c18580858672069fd5;
HCT-1162x75200 base pairs  Genes Gencode V3c212097wgEncodeEH001425GSM9587491.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3583; mapAlgorithm=TH1014; md5sum=bbf8d46a7afa80f70405d0bdcae03d68;
HCT-1162x75200 base pairs  Genes Gencode V3c112096wgEncodeEH001425GSM9587491.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3582; mapAlgorithm=TH1014; md5sum=3c76e402f28536a79c877c0c5aebd9b7;
HCT-1162x75200 base pairs  Genes De Novo212097wgEncodeEH001425GSM9587491.3 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3583; mapAlgorithm=TH1014; md5sum=463cb8d8bb11a29ea4b4f82f8c7f9921;
HCT-1162x75200 base pairs  Genes De Novo112096wgEncodeEH001425GSM9587491.4 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3582; mapAlgorithm=TH1014; md5sum=d4dc01a68a78e42af9a25ca12bdba494;
HCT-1162x75200 base pairs  FastqRd2212097wgEncodeEH001425GSM9587497.0 GBfastq.tgz2011-02-122011-11-11localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3475; md5sum=d0722e6cfcffada8c04b4c93708249bb;
HCT-1162x75200 base pairs  FastqRd2112096wgEncodeEH001425GSM9587497.0 GBfastq.tgz2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=3474; md5sum=95ff2bef7738bbcdd506a1c19c0149c2;
HCT-1162x75200 base pairs  FastqRd1212097wgEncodeEH001425GSM9587496.7 GBfastq.tgz2011-02-122011-11-11localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3475; md5sum=4912e2df4569ae27537b53acb6a6aca7;
HCT-1162x75200 base pairs  FastqRd1112096wgEncodeEH001425GSM9587496.7 GBfastq.tgz2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=3474; md5sum=7be9775795bc68cd82ef5f47a140e7f8;
HCT-1162x75200 base pairs  Exons Gencode V3c212097wgEncodeEH001425GSM9587497.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3583; mapAlgorithm=TH1014; md5sum=fe95d8b88b21e537ba47029892ee71a6;
HCT-1162x75200 base pairs  Exons Gencode V3c112096wgEncodeEH001425GSM9587497.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3582; mapAlgorithm=TH1014; md5sum=ebd8989f154e5e34dc7a9aa9e5bf7053;
HCT-1162x75200 base pairs  Alignments212097wgEncodeEH001425  5.4 MBbam.bai2011-02-122011-11-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3475; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Il200AlignsRep2V2; md5sum=c276d637fb757b93bdfd1ebf26e9192f;
HCT-1162x75200 base pairs  Alignments212097wgEncodeEH001425   10 GBbam2011-02-122011-11-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3475; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Il200AlignsRep2V2; md5sum=6ded65a8d81d53743b63158b70893549;
HCT-1162x75200 base pairs  Alignments112096wgEncodeEH001425  5.2 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3474; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Il200AlignsRep1V2; md5sum=0869164d5f267563bb44d5b27b65159f;
HCT-1162x75200 base pairs  Alignments112096wgEncodeEH001425   10 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3474; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHct116R2x75Il200AlignsRep1V2; md5sum=34a00a4967798a37486729b287154b38;
HSMM2x75200 base pairs  Signal211585wgEncodeEH001420GSM958744177 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6262; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Th1014Il200SigRep2V4; md5sum=327c10dc6dd82c2e5792d73813dbe9c7;
HSMM2x75200 base pairs  Signal111584wgEncodeEH001420GSM958744170 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6263; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Th1014Il200SigRep1V4; md5sum=e0c3f7d68ff6997b5e74a0c43ccd5403;
HSMM2x75200 base pairs  Transcript Gencode V3c211585wgEncodeEH001420GSM958744 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3585; mapAlgorithm=TH1014; md5sum=1147472b2e7bce92102e9b2b2c8d6f10;
HSMM2x75200 base pairs  Transcript Gencode V3c111584wgEncodeEH001420GSM958744 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3584; mapAlgorithm=TH1014; md5sum=dfc8a56eadec71f012c1ac8dd782d856;
HSMM2x75200 base pairs  Transcripts De novo211585wgEncodeEH001420GSM9587443.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3585; mapAlgorithm=TH1014; md5sum=e8bd486aa37683f133732e34b3c314bd;
HSMM2x75200 base pairs  Transcripts De novo111584wgEncodeEH001420GSM9587443.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3584; mapAlgorithm=TH1014; md5sum=bffa02002543426efc1784028793d2f2;
HSMM2x75200 base pairs  TSS Gencode V3c211585wgEncodeEH001420GSM9587443.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3585; mapAlgorithm=TH1014; md5sum=0fa074b40317b33111329ee860f45806;
HSMM2x75200 base pairs  TSS Gencode V3c111584wgEncodeEH001420GSM9587443.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3584; mapAlgorithm=TH1014; md5sum=e1789f8df3101eaeeffd83c390e0d732;
HSMM2x75200 base pairs  Splices211585wgEncodeEH001420GSM9587442.8 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3469; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Il200SplicesRep2V2; md5sum=792ca88a3ced81e942c6fd24d4e28cbf;
HSMM2x75200 base pairs  Splices211585wgEncodeEH001420GSM9587441.1 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3469; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Il200SplicesRep2V2; md5sum=33934ac8aa13e7b38da48a1602328948;
HSMM2x75200 base pairs  Splices111584wgEncodeEH001420GSM9587442.7 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3468; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Il200SplicesRep1V2; md5sum=659639e302916e6a7c58e7036f592089;
HSMM2x75200 base pairs  Splices111584wgEncodeEH001420GSM9587441.2 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3468; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Il200SplicesRep1V2; md5sum=21f7b4a09370c7732939c476ebb1a871;
HSMM2x75200 base pairs  Junctions211585wgEncodeEH001420GSM9587444.6 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5293; mapAlgorithm=TH1014; md5sum=1d9b9bec86c99583b0f57ae381c401f5;
HSMM2x75200 base pairs  Junctions111584wgEncodeEH001420GSM9587444.5 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5292; mapAlgorithm=TH1014; md5sum=4a09c2dd8c9f93cffce7a04a87c93562;
HSMM2x75200 base pairs  Genes Gencode V3c211585wgEncodeEH001420GSM9587441.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3585; mapAlgorithm=TH1014; md5sum=47ff0fe86774603a76324509aef0ed5d;
HSMM2x75200 base pairs  Genes Gencode V3c111584wgEncodeEH001420GSM9587441.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3584; mapAlgorithm=TH1014; md5sum=29ed5785f0de73eb60bdc8b9b0b2faf9;
HSMM2x75200 base pairs  Genes De Novo211585wgEncodeEH001420GSM958744829 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3585; mapAlgorithm=TH1014; md5sum=9f78fe778c0b5d6e4c1e17d00abdb1d4;
HSMM2x75200 base pairs  Genes De Novo111584wgEncodeEH001420GSM958744825 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3584; mapAlgorithm=TH1014; md5sum=128b6966045b3703ab4361afa98f81ad;
HSMM2x75200 base pairs  FastqRd2211585wgEncodeEH001420GSM9587444.4 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1908; md5sum=85b8477a09a39f5b620a87132edaaf6b;
HSMM2x75200 base pairs  FastqRd2111584wgEncodeEH001420GSM9587444.4 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1907; md5sum=01ee32f85f02b8e4449075b5ded2f1ac;
HSMM2x75200 base pairs  FastqRd1211585wgEncodeEH001420GSM9587444.3 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1908; md5sum=f09c61a04a82906c092df0437e74c52c;
HSMM2x75200 base pairs  FastqRd1111584wgEncodeEH001420GSM9587444.4 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1907; md5sum=70049c16aff4446a473f1bdbbd3a9846;
HSMM2x75200 base pairs  Exons Gencode V3c211585wgEncodeEH001420GSM9587447.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3585; mapAlgorithm=TH1014; md5sum=84c1b509651697c309858aff394ed582;
HSMM2x75200 base pairs  Exons Gencode V3c111584wgEncodeEH001420GSM9587447.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3584; mapAlgorithm=TH1014; md5sum=45c27016c9041f6398211257a331fd90;
HSMM2x75200 base pairs  Alignments211585wgEncodeEH001420  4.6 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3469; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Il200AlignsRep2V2; md5sum=8da33db226f90653a9c371e246bab4c8;
HSMM2x75200 base pairs  Alignments211585wgEncodeEH001420  5.9 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3469; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Il200AlignsRep2V2; md5sum=536fc38bd41cd24fba14271a2b9aea57;
HSMM2x75200 base pairs  Alignments111584wgEncodeEH001420  4.5 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3468; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Il200AlignsRep1V2; md5sum=9bcae5aa5cb93d3a6ea95e2e5d312478;
HSMM2x75200 base pairs  Alignments111584wgEncodeEH001420  6.0 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3468; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHsmmR2x75Il200AlignsRep1V2; md5sum=76c6099c1ce24acc59335f6e31354698;
HUVEC1x75DNone  Plus Raw signal211205wgEncodeEH000133GSM958738 20 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6353; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UPlusRawRep2V4; md5sum=0b3856fa998a1c05b61a67d7f4d6b4fd;
HUVEC1x75DNone  Plus Raw signal111206wgEncodeEH000133GSM958738 32 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6352; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UPlusRawRep1V4; md5sum=e515f657ea24194ea1af5639acf3a37e;
HUVEC1x75DNone  Minus Raw signal211205wgEncodeEH000133GSM958738 20 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6353; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UMinusRawRep2V4; md5sum=d8be96747aa55460a0560db00cf92d60;
HUVEC1x75DNone  Minus Raw signal111206wgEncodeEH000133GSM958738 33 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6352; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dTh1014UMinusRawRep1V4; md5sum=97e5c43eb6b2934d0ab4f69a3439cf5c;
HUVEC1x75DNone  Splices211205wgEncodeEH000133GSM9587382.2 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3457; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dSplicesRep2V2; md5sum=b56ae424f1489b868128d737f6f8de16;
HUVEC1x75DNone  Splices211205wgEncodeEH000133GSM958738103 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3457; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dSplicesRep2V2; md5sum=bff9a47403b3b689071b49903950431b;
HUVEC1x75DNone  Splices111206wgEncodeEH000133GSM9587382.3 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3456; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dSplicesRep1V2; md5sum=1ed1363116448f112dc2fa41784d1973;
HUVEC1x75DNone  Splices111206wgEncodeEH000133GSM958738262 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3456; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dSplicesRep1V2; md5sum=667c9cacf7150649650dae4026f33d2b;
HUVEC1x75DNone  Raw data211205wgEncodeEH000133GSM958738883 MBfastq2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1645; md5sum=5bc9a27bd35f6a5cb24eb4c52914e360;
HUVEC1x75DNone  Raw data111206wgEncodeEH000133GSM9587381.9 GBfastq2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1639; md5sum=9dd06134e9ab2105cb57ad69cc23f13f;
HUVEC1x75DNone  Alignments211205wgEncodeEH000133  3.1 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3457; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dAlignsRep2V2; md5sum=79d36868185961b5695ad4b415955cb4;
HUVEC1x75DNone  Alignments211205wgEncodeEH000133  434 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3457; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dAlignsRep2V2; md5sum=d0fcf94d7d3ac10e60e1e7b7c935a876;
HUVEC1x75DNone  Alignments111206wgEncodeEH000133  3.7 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3456; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dAlignsRep1V2; md5sum=7bfa2235b23f05c71d6ff4209d0defc9;
HUVEC1x75DNone  Alignments111206wgEncodeEH000133  1.1 GBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3456; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR1x75dAlignsRep1V2; md5sum=923812c5c3a7938b2ce7a3f4eb9f8db3;
HUVEC2x75200 base pairs  Signal210885wgEncodeEH000129GSM958734140 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6260; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Th1014Il200SigRep2V4; md5sum=a53719c77fdb0671c24ccb5e2ddbf8d2;
HUVEC2x75200 base pairs  Signal110883wgEncodeEH000129GSM958734179 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6261; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Th1014Il200SigRep1V4; md5sum=a75fdcff8f9ff1d0d82d709536f05301;
HUVEC2x75200 base pairs  Transcript Gencode V3c210885wgEncodeEH000129GSM958734 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3587; mapAlgorithm=TH1014; md5sum=7091ee78cd8374f021f341cad16838d5;
HUVEC2x75200 base pairs  Transcript Gencode V3c110883wgEncodeEH000129GSM958734 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3586; mapAlgorithm=TH1014; md5sum=e9136dad28c1be3ef38891c228aa32e6;
HUVEC2x75200 base pairs  Transcripts De novo210885wgEncodeEH000129GSM9587343.4 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3587; mapAlgorithm=TH1014; md5sum=226a7ad94b3a347089341840bba8b9b0;
HUVEC2x75200 base pairs  Transcripts De novo110883wgEncodeEH000129GSM9587343.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3586; mapAlgorithm=TH1014; md5sum=84df76bfcd762ae97f529d8f64b24675;
HUVEC2x75200 base pairs  TSS Gencode V3c210885wgEncodeEH000129GSM9587343.0 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3587; mapAlgorithm=TH1014; md5sum=dde5f274b867db5783df341c772abecf;
HUVEC2x75200 base pairs  TSS Gencode V3c110883wgEncodeEH000129GSM9587343.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3586; mapAlgorithm=TH1014; md5sum=2d99ab7378c17f5d8f65ff1a5c55a186;
HUVEC2x75200 base pairs  Splices210885wgEncodeEH000129GSM9587342.6 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3471; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Il200SplicesRep2V2; md5sum=bc84fe1e35b32569ebda28eb82e0460e;
HUVEC2x75200 base pairs  Splices210885wgEncodeEH000129GSM958734794 MBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3471; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Il200SplicesRep2V2; md5sum=f032a8216e467cdc8e35c8cb6738f208;
HUVEC2x75200 base pairs  Splices110883wgEncodeEH000129GSM9587342.6 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3470; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Il200SplicesRep1V2; md5sum=0b368d951e8b982cb505716ab84a3423;
HUVEC2x75200 base pairs  Splices110883wgEncodeEH000129GSM9587341013 MBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3470; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Il200SplicesRep1V2; md5sum=5c4f0385227aa67b3bd11cdd3599687a;
HUVEC2x75200 base pairs  Junctions210885wgEncodeEH000129GSM9587344.1 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5295; mapAlgorithm=TH1014; md5sum=ba22607c402be8c94de1bd3bbeffc4bf;
HUVEC2x75200 base pairs  Junctions110883wgEncodeEH000129GSM9587344.4 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5294; mapAlgorithm=TH1014; md5sum=28bcbc4c4602a24eca0207c92e41933f;
HUVEC2x75200 base pairs  Genes Gencode V3c210885wgEncodeEH000129GSM9587341.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3587; mapAlgorithm=TH1014; md5sum=1b8c7c0bbf347956601d1aa054f1dbe0;
HUVEC2x75200 base pairs  Genes Gencode V3c110883wgEncodeEH000129GSM9587341.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3586; mapAlgorithm=TH1014; md5sum=dcc597f21e2267774761b2f17095c33c;
HUVEC2x75200 base pairs  Genes De Novo210885wgEncodeEH000129GSM958734732 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3587; mapAlgorithm=TH1014; md5sum=3308246cfc40ed06aca54621c0bca77b;
HUVEC2x75200 base pairs  Genes De Novo110883wgEncodeEH000129GSM958734841 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3586; mapAlgorithm=TH1014; md5sum=e1ccc8257ebf2a18a49f1e973b3c5bae;
HUVEC2x75200 base pairs  FastqRd2210885wgEncodeEH000129GSM9587343.0 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1664; md5sum=325c828fb2c63a84af9a12f546563705;
HUVEC2x75200 base pairs  FastqRd2110883wgEncodeEH000129GSM9587343.9 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1665; md5sum=748f7f1cfbeba2d58c3ec2e0ef5c6fe7;
HUVEC2x75200 base pairs  FastqRd1210885wgEncodeEH000129GSM9587343.0 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1664; md5sum=e5005bcbedb456ec37693ef66ca4d945;
HUVEC2x75200 base pairs  FastqRd1110883wgEncodeEH000129GSM9587344.7 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1665; md5sum=3c88bfe058d345627b19360c2cfd296f;
HUVEC2x75200 base pairs  Exons Gencode V3c210885wgEncodeEH000129GSM9587347.6 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3587; mapAlgorithm=TH1014; md5sum=14698761eba6a3977124a24b910e2ab0;
HUVEC2x75200 base pairs  Exons Gencode V3c110883wgEncodeEH000129GSM9587347.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3586; mapAlgorithm=TH1014; md5sum=26548d11c3499be60c41c645ee7259a1;
HUVEC2x75200 base pairs  Alignments210885wgEncodeEH000129  4.2 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3471; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Il200AlignsRep2V2; md5sum=215779942f4c1bd117a3b8ff7dbcd9ab;
HUVEC2x75200 base pairs  Alignments210885wgEncodeEH000129  4.1 GBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3471; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Il200AlignsRep2V2; md5sum=2cc9fdb535905e17682cae7efc9873a8;
HUVEC2x75200 base pairs  Alignments110883wgEncodeEH000129  4.6 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3470; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Il200AlignsRep1V2; md5sum=b0949131457af254990eb860bb000abf;
HUVEC2x75200 base pairs  Alignments110883wgEncodeEH000129  5.3 GBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3470; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHuvecR2x75Il200AlignsRep1V2; md5sum=994c1089194c3fc735dcfb2a3e2d8aa9;
HeLa-S31x75DNone  Plus Raw signal211207wgEncodeEH000134GSM958739 26 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6355; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep2V4; md5sum=8c68652122e00eb4507ee1f148072b58;
HeLa-S31x75DNone  Plus Raw signal111208wgEncodeEH000134GSM958739 24 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6354; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UPlusRawRep1V4; md5sum=7b73bba7bc3e3ed2a520b95293751089;
HeLa-S31x75DNone  Minus Raw signal211207wgEncodeEH000134GSM958739 26 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6355; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep2V4; md5sum=1bb7aea844d7bcbbd1f232717fa9aeb0;
HeLa-S31x75DNone  Minus Raw signal111208wgEncodeEH000134GSM958739 24 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6354; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dTh1014UMinusRawRep1V4; md5sum=998532b3eb2e4915fc7bb305310dda9f;
HeLa-S31x75DNone  Splices211207wgEncodeEH000134GSM9587392.2 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3453; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep2V2; md5sum=1d97b9d8786a66bb1d0371242af2dd6a;
HeLa-S31x75DNone  Splices211207wgEncodeEH000134GSM958739123 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3453; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep2V2; md5sum=54d6a2a677bf445d78ffbf9f57ded488;
HeLa-S31x75DNone  Splices111208wgEncodeEH000134GSM9587392.2 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3452; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep1V2; md5sum=929afdbc95ae5e50fcd9b218132551c9;
HeLa-S31x75DNone  Splices111208wgEncodeEH000134GSM958739 99 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3452; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dSplicesRep1V2; md5sum=04eaef8ed2a4c788486752976bff1799;
HeLa-S31x75DNone  Raw data211207wgEncodeEH000134GSM9587391.1 GBfastq2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1635; md5sum=d1bbe9af8e9481bf277c8671247aeb0e;
HeLa-S31x75DNone  Raw data111208wgEncodeEH000134GSM958739907 MBfastq2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1634; md5sum=eeb166a5b043e44e9589c0b7c4f956c3;
HeLa-S31x75DNone  Alignments211207wgEncodeEH000134  3.6 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3453; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dAlignsRep2V2; md5sum=1f8e5f8eb8b3b9d2d5afbbb42fadf4ec;
HeLa-S31x75DNone  Alignments211207wgEncodeEH000134  606 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3453; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dAlignsRep2V2; md5sum=857438513e376d2558253af8387b71be;
HeLa-S31x75DNone  Alignments111208wgEncodeEH000134  3.4 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3452; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dAlignsRep1V2; md5sum=13a263412fb9c9bdc8f037df6bf6a274;
HeLa-S31x75DNone  Alignments111208wgEncodeEH000134  500 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3452; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R1x75dAlignsRep1V2; md5sum=6ad12d866a26c1b6a37b310ebd788ad1;
HeLa-S32x75200 base pairs  Signal210882wgEncodeEH000130GSM958735207 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6258; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Th1014Il200SigRep2V4; md5sum=4a02e545384cc9aee6d7c41fb8f035fe;
HeLa-S32x75200 base pairs  Signal110881wgEncodeEH000130GSM958735163 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6259; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Th1014Il200SigRep1V4; md5sum=a1b162e27140c5b624d612664eb8e4b8;
HeLa-S32x75200 base pairs  Transcript Gencode V3c210882wgEncodeEH000130GSM958735 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3589; mapAlgorithm=TH1014; md5sum=7ce45175462e557d550f55be34db910c;
HeLa-S32x75200 base pairs  Transcript Gencode V3c110881wgEncodeEH000130GSM958735 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3588; mapAlgorithm=TH1014; md5sum=ad57de084f12e95972bf5dd016c5b791;
HeLa-S32x75200 base pairs  Transcripts De novo210882wgEncodeEH000130GSM9587354.3 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3589; mapAlgorithm=TH1014; md5sum=1b8a54dfe72dd479bc0617389422cf73;
HeLa-S32x75200 base pairs  Transcripts De novo110881wgEncodeEH000130GSM9587354.0 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3588; mapAlgorithm=TH1014; md5sum=c4c952b6fbf79984642e7e1fcccf04e5;
HeLa-S32x75200 base pairs  TSS Gencode V3c210882wgEncodeEH000130GSM9587353.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3589; mapAlgorithm=TH1014; md5sum=2db29bf2a3a5768f1f282b346ca21718;
HeLa-S32x75200 base pairs  TSS Gencode V3c110881wgEncodeEH000130GSM9587353.0 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3588; mapAlgorithm=TH1014; md5sum=e95112769ef97120545e6a0b3e5a1dc3;
HeLa-S32x75200 base pairs  Splices210882wgEncodeEH000130GSM9587352.6 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3465; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Il200SplicesRep2V2; md5sum=8fe19068876022dd2d78ee794cbd1c92;
HeLa-S32x75200 base pairs  Splices210882wgEncodeEH000130GSM958735863 MBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3465; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Il200SplicesRep2V2; md5sum=2d1393f563e27fdef545e28f105b152c;
HeLa-S32x75200 base pairs  Splices110881wgEncodeEH000130GSM9587352.5 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3418; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Il200SplicesRep1V2; md5sum=4e54a9347c25e75fa454dd684141e9e2;
HeLa-S32x75200 base pairs  Splices110881wgEncodeEH000130GSM958735568 MBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3418; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Il200SplicesRep1V2; md5sum=bb04716ad55e6bc1fc13908b572ecfdd;
HeLa-S32x75200 base pairs  Junctions210882wgEncodeEH000130GSM9587354.5 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5297; mapAlgorithm=TH1014; md5sum=be38198756c8f9294e2bd38fe461e206;
HeLa-S32x75200 base pairs  Junctions110881wgEncodeEH000130GSM9587354.0 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5296; mapAlgorithm=TH1014; md5sum=46635f52b56ee3e113009afa5bb881b9;
HeLa-S32x75200 base pairs  Genes Gencode V3c210882wgEncodeEH000130GSM9587351.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3589; mapAlgorithm=TH1014; md5sum=15c345ecc4dc756d92faf20e37f4d86c;
HeLa-S32x75200 base pairs  Genes Gencode V3c110881wgEncodeEH000130GSM9587351.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3588; mapAlgorithm=TH1014; md5sum=3309cc796c55d9529df410a9fa125928;
HeLa-S32x75200 base pairs  Genes De Novo210882wgEncodeEH000130GSM9587351.0 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3589; mapAlgorithm=TH1014; md5sum=0f3235a8ab7398e7ecc3fec2d129c6d1;
HeLa-S32x75200 base pairs  Genes De Novo110881wgEncodeEH000130GSM958735962 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3588; mapAlgorithm=TH1014; md5sum=46d0b7acf8b499a379f7e2fab9fc395f;
HeLa-S32x75200 base pairs  FastqRd2210882wgEncodeEH000130GSM9587353.8 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1662; md5sum=b0c95c0d38374fbc6dd9f60e30e7cca7;
HeLa-S32x75200 base pairs  FastqRd2110881wgEncodeEH000130GSM9587353.1 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1663; md5sum=6bba7f69bfe0cedcd7c1ff01a4b044bf;
HeLa-S32x75200 base pairs  FastqRd1210882wgEncodeEH000130GSM9587354.5 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1662; md5sum=8b4e2325aaa0e93a56d512c48c030c26;
HeLa-S32x75200 base pairs  FastqRd1110881wgEncodeEH000130GSM9587353.7 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1663; md5sum=ac841c2bd1040b8d9c33b835ee73fd54;
HeLa-S32x75200 base pairs  Exons Gencode V3c210882wgEncodeEH000130GSM9587357.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3589; mapAlgorithm=TH1014; md5sum=2d023afa308bdd5b58665d0b1a5a0544;
HeLa-S32x75200 base pairs  Exons Gencode V3c110881wgEncodeEH000130GSM9587357.6 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3588; mapAlgorithm=TH1014; md5sum=8ffca98591083a944ff468bc20eb2479;
HeLa-S32x75200 base pairs  Alignments210882wgEncodeEH000130  4.9 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3465; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep2V2; md5sum=4aa2d30f0dc3c5972cbb61ddbccdce52;
HeLa-S32x75200 base pairs  Alignments210882wgEncodeEH000130  5.3 GBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3465; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep2V2; md5sum=355dbee232bc44418ac302bbb8a70dbf;
HeLa-S32x75200 base pairs  Alignments110881wgEncodeEH000130  4.5 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3418; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep1V2; md5sum=a2b5be64d6e1167613d7a866db0130f0;
HeLa-S32x75200 base pairs  Alignments110881wgEncodeEH000130  3.6 GBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3418; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHelas3R2x75Il200AlignsRep1V2; md5sum=7aec375011d0161d6aa00cf6ef78168b;
HepG21x75DNone  Plus Raw signal211209wgEncodeEH000135GSM958740 28 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6357; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UPlusRawRep2V4; md5sum=b9e0e8b271246106275fdb895ea3df62;
HepG21x75DNone  Plus Raw signal111210wgEncodeEH000135GSM958740 32 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6356; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UPlusRawRep1V4; md5sum=d47c42f3ee5fa83131902ea810f20235;
HepG21x75DNone  Minus Raw signal211209wgEncodeEH000135GSM958740 28 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6357; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UMinusRawRep2V4; md5sum=aa58d67bab9fc717094a980de346ef69;
HepG21x75DNone  Minus Raw signal111210wgEncodeEH000135GSM958740 32 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6356; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dTh1014UMinusRawRep1V4; md5sum=7cdb8ca0da91f2b82cd42788e29d92f2;
HepG21x75DNone  Splices211209wgEncodeEH000135GSM9587402.3 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3455; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dSplicesRep2V2; md5sum=3209acd661d774efe56edfa20c126f90;
HepG21x75DNone  Splices211209wgEncodeEH000135GSM958740253 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3455; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dSplicesRep2V2; md5sum=ec3ef47efd4e156ae096aacc5fc5369d;
HepG21x75DNone  Splices111210wgEncodeEH000135GSM9587402.3 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3454; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dSplicesRep1V2; md5sum=a9e243707d48c928fd3547c71c082c48;
HepG21x75DNone  Splices111210wgEncodeEH000135GSM958740301 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3454; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dSplicesRep1V2; md5sum=ecb7fb96775ccbab8033554234282f3f;
HepG21x75DNone  Raw data211209wgEncodeEH000135GSM9587401.3 GBfastq2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1638; md5sum=5041d82fe06f498fb762487f7137445a;
HepG21x75DNone  Raw data111210wgEncodeEH000135GSM9587402.1 GBfastq2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1636; md5sum=4ddf86e54e0d82a66840d366124d8c4d;
HepG21x75DNone  Alignments211209wgEncodeEH000135  3.6 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - Replace conflicting md5sums; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-09-08; subId=4797; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dAlignsRep2V3; md5sum=09c331e0fc9a06c7e235d7aedcb8c2f9;
HepG21x75DNone  Alignments211209wgEncodeEH000135  855 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - Replace conflicting md5sums; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-09-08; subId=4797; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dAlignsRep2V3; md5sum=838a7d07cd08763fa6a61bedcd1a82c9;
HepG21x75DNone  Alignments111210wgEncodeEH000135  3.9 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - Replace conflicting md5sums; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-09-08; subId=4798; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dAlignsRep1V3; md5sum=8b53dca85af15bfda5807682cd957092;
HepG21x75DNone  Alignments111210wgEncodeEH000135  1.4 GBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - Replace conflicting md5sums; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-09-08; subId=4798; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R1x75dAlignsRep1V3; md5sum=cf087561321957c34bcd80ca60d830f5;
HepG22x75200 base pairs  Signal210879wgEncodeEH000127GSM958732198 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6256; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Th1014Il200SigRep2V4; md5sum=c63b25f38723d211ef77e8b1250b4cbd;
HepG22x75200 base pairs  Signal110878wgEncodeEH000127GSM958732182 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6257; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Th1014Il200SigRep1V4; md5sum=ac40996bbdd0c0438168c5aab5473766;
HepG22x75200 base pairs  Transcript Gencode V3c210879wgEncodeEH000127GSM958732 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3591; mapAlgorithm=TH1014; md5sum=8186a27e795b042287e1148e3b1aee06;
HepG22x75200 base pairs  Transcript Gencode V3c110878wgEncodeEH000127GSM958732 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3590; mapAlgorithm=TH1014; md5sum=618e4c8344400e48386c93f21de3eeef;
HepG22x75200 base pairs  Transcripts De novo210879wgEncodeEH000127GSM9587324.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3591; mapAlgorithm=TH1014; md5sum=7a395824a160f9ef1013e840f146ee9e;
HepG22x75200 base pairs  Transcripts De novo110878wgEncodeEH000127GSM9587323.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3590; mapAlgorithm=TH1014; md5sum=3c0d1661f8a40bf821f58743e55da46e;
HepG22x75200 base pairs  TSS Gencode V3c210879wgEncodeEH000127GSM9587323.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3591; mapAlgorithm=TH1014; md5sum=060b742f4928588648943280f72afd23;
HepG22x75200 base pairs  TSS Gencode V3c110878wgEncodeEH000127GSM9587323.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3590; mapAlgorithm=TH1014; md5sum=84b098b5a0b1be586a9490d704a36c6d;
HepG22x75200 base pairs  Splices210879wgEncodeEH000127GSM9587322.7 MBbam.bai2010-01-222010-10-22localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3467; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Il200SplicesRep2V2; md5sum=ce6575149e44635177ecb7ae7f5ac3de;
HepG22x75200 base pairs  Splices210879wgEncodeEH000127GSM9587321.3 GBbam2010-01-222010-10-22localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3467; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Il200SplicesRep2V2; md5sum=801604e36f69354a80d22a22b3e99e00;
HepG22x75200 base pairs  Splices110878wgEncodeEH000127GSM9587322.6 MBbam.bai2010-01-122010-10-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3466; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Il200SplicesRep1V2; md5sum=60a3fd3fbcd4ad2d4c006744bc33c2c5;
HepG22x75200 base pairs  Splices110878wgEncodeEH000127GSM9587321.1 GBbam2010-01-122010-10-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3466; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Il200SplicesRep1V2; md5sum=716b0304c6826d6eec9f056a2a6111c9;
HepG22x75200 base pairs  Junctions210879wgEncodeEH000127GSM9587325.7 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5299; mapAlgorithm=TH1014; md5sum=bb25f5a4aaebe2731d9ee43a2d4acff5;
HepG22x75200 base pairs  Junctions110878wgEncodeEH000127GSM9587324.3 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5298; mapAlgorithm=TH1014; md5sum=675a65b6ff090bf54b91b9340ad89b64;
HepG22x75200 base pairs  Genes Gencode V3c210879wgEncodeEH000127GSM9587321.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3591; mapAlgorithm=TH1014; md5sum=19ac6edfeb690e3145def6df223d6ffc;
HepG22x75200 base pairs  Genes Gencode V3c110878wgEncodeEH000127GSM9587321.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3590; mapAlgorithm=TH1014; md5sum=d2156f139cdd7b2eea47cfbde9a00c14;
HepG22x75200 base pairs  Genes De Novo210879wgEncodeEH000127GSM958732983 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3591; mapAlgorithm=TH1014; md5sum=f4b4b8b89bc157646933d69bfa0e5b8a;
HepG22x75200 base pairs  Genes De Novo110878wgEncodeEH000127GSM958732911 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3590; mapAlgorithm=TH1014; md5sum=307f3f0cf4f4ca3300ef5b39a9d78541;
HepG22x75200 base pairs  FastqRd2210879wgEncodeEH000127GSM9587325.6 GBfastq.tgz2010-01-222010-10-22localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-22; subId=1660; md5sum=187d689352b61d09e954f0d510a1bda3;
HepG22x75200 base pairs  FastqRd2110878wgEncodeEH000127GSM9587324.8 GBfastq.tgz2010-01-122010-10-11localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-12; subId=1661; md5sum=1eaa731e3060390920def92de527c39b;
HepG22x75200 base pairs  FastqRd1210879wgEncodeEH000127GSM9587325.8 GBfastq.tgz2010-01-222010-10-22localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-22; subId=1660; md5sum=7bb086e02f38e86bc54517056c3c3a5b;
HepG22x75200 base pairs  FastqRd1110878wgEncodeEH000127GSM9587324.7 GBfastq.tgz2010-01-122010-10-11localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-12; subId=1661; md5sum=9b64b6e77b31420cb9c6b43a9992ffa4;
HepG22x75200 base pairs  Exons Gencode V3c210879wgEncodeEH000127GSM9587327.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3591; mapAlgorithm=TH1014; md5sum=9c592b6a65219aa33f2a7540a0a07900;
HepG22x75200 base pairs  Exons Gencode V3c110878wgEncodeEH000127GSM9587327.6 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3590; mapAlgorithm=TH1014; md5sum=7e17e170b718706bd09635fe96dfbb1f;
HepG22x75200 base pairs  Alignments210879wgEncodeEH000127  4.8 MBbam.bai2010-01-222010-10-22localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3467; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Il200AlignsRep2V2; md5sum=bb95ed70d41b7c57de4129ff031672d7;
HepG22x75200 base pairs  Alignments210879wgEncodeEH000127  7.0 GBbam2010-01-222010-10-22localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3467; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Il200AlignsRep2V2; md5sum=a2f89cf26fcb7d3f07bc74ba6a21e0bf;
HepG22x75200 base pairs  Alignments110878wgEncodeEH000127  4.7 MBbam.bai2010-01-122010-10-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3466; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Il200AlignsRep1V2; md5sum=7d0ce53f821201eafb884de615c83658;
HepG22x75200 base pairs  Alignments110878wgEncodeEH000127  6.0 GBbam2010-01-122010-10-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3466; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqHepg2R2x75Il200AlignsRep1V2; md5sum=e6027affb5310fb9175806906132ae0d;
K5621x75DNone  Plus Raw signal211007wgEncodeEH000126GSM958731 35 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6359; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dTh1014UPlusRawRep2V4; md5sum=429220fd702924f6a842eba80ba331cb;
K5621x75DNone  Plus Raw signal111008wgEncodeEH000126GSM958731 35 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6358; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dTh1014UPlusRawRep1V4; md5sum=d9183c7ed78ce951c620d1dec39d366e;
K5621x75DNone  Minus Raw signal211007wgEncodeEH000126GSM958731 35 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6359; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dTh1014UMinusRawRep2V4; md5sum=d9f06a4dc53c43733726bab9693b3be4;
K5621x75DNone  Minus Raw signal111008wgEncodeEH000126GSM958731 35 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6358; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dTh1014UMinusRawRep1V4; md5sum=b9e898b101d67c8ac44d2d0960c52b6b;
K5621x75DNone  Splices211007wgEncodeEH000126GSM9587312.4 MBbam.bai2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3459; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dSplicesRep2V2; md5sum=878e66f4ea6dad2e2ec9e0481951684e;
K5621x75DNone  Splices211007wgEncodeEH000126GSM958731301 MBbam2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3459; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dSplicesRep2V2; md5sum=b6fcc38c93ab4cd45dcadad6b24159f4;
K5621x75DNone  Splices111008wgEncodeEH000126GSM9587312.3 MBbam.bai2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3458; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dSplicesRep1V2; md5sum=38a4781aa67c1c0969f4ae7247038271;
K5621x75DNone  Splices111008wgEncodeEH000126GSM958731335 MBbam2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3458; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dSplicesRep1V2; md5sum=6c5fe19781edaccc7ab88b95127cf03f;
K5621x75DNone  Raw data211007wgEncodeEH000126GSM9587311.9 GBfastq.tgz2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - Fixed corrupted quality scores; origAssembly=hg18; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-07-30; subId=7726; md5sum=78a0f898277f083d9dec6458c83c7998;
K5621x75DNone  Raw data111008wgEncodeEH000126GSM9587311.9 GBfastq2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-02-10; subId=1874; md5sum=e09ea52b7b37de7982296df6351f26ed;
K5621x75DNone  Alignments211007wgEncodeEH000126  3.9 MBbam.bai2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3459; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dAlignsRep2V2; md5sum=99ccace987e8989d5821b671d1103c34;
K5621x75DNone  Alignments211007wgEncodeEH000126  1.3 GBbam2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3459; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dAlignsRep2V2; md5sum=04c3bed4e84dfd806d5fe047171a357f;
K5621x75DNone  Alignments111008wgEncodeEH000126  3.6 MBbam.bai2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3458; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dAlignsRep1V2; md5sum=31452197d9adc3544b920da3e6f0ca88;
K5621x75DNone  Alignments111008wgEncodeEH000126  1.4 GBbam2010-01-062010-10-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3458; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R1x75dAlignsRep1V2; md5sum=46079cae1a4f5978ff9bea2c90738ae7;
K5622x75200 base pairs  Signal210567wgEncodeEH000124GSM958729250 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6254; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Th1014Il200SigRep2V4; md5sum=d515e68f475eb0fa8db58bef58273aca;
K5622x75200 base pairs  Signal110517wgEncodeEH000124GSM958729248 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6255; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Th1014Il200SigRep1V4; md5sum=1ac9727992f3457169c3d159c07e1d4f;
K5622x75200 base pairs  Transcript Gencode V3c210567wgEncodeEH000124GSM958729 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3593; mapAlgorithm=TH1014; md5sum=c196b9c1a135528f15ba5b46b47efcb3;
K5622x75200 base pairs  Transcript Gencode V3c110517wgEncodeEH000124GSM958729 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3592; mapAlgorithm=TH1014; md5sum=869bad84d8766a22c0c4ed7026ce735d;
K5622x75200 base pairs  Transcripts De novo210567wgEncodeEH000124GSM9587294.6 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3593; mapAlgorithm=TH1014; md5sum=53288a65791f700b1f187bde8b1d20f7;
K5622x75200 base pairs  Transcripts De novo110517wgEncodeEH000124GSM9587294.3 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3592; mapAlgorithm=TH1014; md5sum=d6a578f50c057d89204b2587f765479f;
K5622x75200 base pairs  TSS Gencode V3c210567wgEncodeEH000124GSM9587293.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3593; mapAlgorithm=TH1014; md5sum=6cfecef0953867d157745b3d620aa123;
K5622x75200 base pairs  TSS Gencode V3c110517wgEncodeEH000124GSM9587293.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3592; mapAlgorithm=TH1014; md5sum=291b26d4ee75667c6961f6a42cdca27b;
K5622x75200 base pairs  Splices210567wgEncodeEH000124GSM9587292.8 MBbam.bai2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3472; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Il200SplicesRep2V2; md5sum=ace475045b8a19cc89c91503a50584f6;
K5622x75200 base pairs  Splices210567wgEncodeEH000124GSM9587291.3 GBbam2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3472; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Il200SplicesRep2V2; md5sum=bd3e6dbc27eac2ff24fb22e558255bf5;
K5622x75200 base pairs  Splices110517wgEncodeEH000124GSM9587292.8 MBbam.bai2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3419; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Il200SplicesRep1V2; md5sum=aceb4f12930994af9c9d04efa852c306;
K5622x75200 base pairs  Splices110517wgEncodeEH000124GSM9587291.4 GBbam2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3419; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Il200SplicesRep1V2; md5sum=5e5f8135899518696eaaf59fb781dc83;
K5622x75200 base pairs  Junctions210567wgEncodeEH000124GSM9587296.4 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5301; mapAlgorithm=TH1014; md5sum=133430d8219a7764da0b30815da1f5fc;
K5622x75200 base pairs  Junctions110517wgEncodeEH000124GSM9587296.4 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5300; mapAlgorithm=TH1014; md5sum=32f5439476fc6aa72051f07efa51f382;
K5622x75200 base pairs  Genes Gencode V3c210567wgEncodeEH000124GSM9587291.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3593; mapAlgorithm=TH1014; md5sum=81e86613a893e36ffa115b8163ead5a1;
K5622x75200 base pairs  Genes Gencode V3c110517wgEncodeEH000124GSM9587291.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3592; mapAlgorithm=TH1014; md5sum=e1853cbbd73f1ecc9a4b6125d91c1c40;
K5622x75200 base pairs  Genes De Novo210567wgEncodeEH000124GSM9587291.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3593; mapAlgorithm=TH1014; md5sum=1a2ae71f8d456db33a83ba9ab95e5cac;
K5622x75200 base pairs  Genes De Novo110517wgEncodeEH000124GSM9587291.0 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3592; mapAlgorithm=TH1014; md5sum=716f0e96de4468566be522a2d4c582e1;
K5622x75200 base pairs  FastqRd2210567wgEncodeEH000124GSM9587296.5 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - corrected some bad quality scores in the previous version; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-07; subId=5142; md5sum=ae57b122232944a32f7febee5b383ad4;
K5622x75200 base pairs  FastqRd2110517wgEncodeEH000124GSM9587297.0 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - corrected some bad quality scores in the previous version; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-07; subId=5141; md5sum=7cef447e04dc9939b53b82d24c27b44d;
K5622x75200 base pairs  FastqRd1210567wgEncodeEH000124GSM9587296.5 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - corrected some bad quality scores in the previous version; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-07; subId=5140; md5sum=e3d3c950df44a8d9905ac7f5906c8804;
K5622x75200 base pairs  FastqRd1110517wgEncodeEH000124GSM9587296.7 GBfastq.tgz2010-01-152010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - corrected some bad quality scores in the previous version; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-07; subId=5139; md5sum=7d504f1aff5522e12540716459ee080a;
K5622x75200 base pairs  Exons Gencode V3c210567wgEncodeEH000124GSM9587297.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3593; mapAlgorithm=TH1014; md5sum=f24c330bdee348a4b22fc39d88848efa;
K5622x75200 base pairs  Exons Gencode V3c110517wgEncodeEH000124GSM9587297.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3592; mapAlgorithm=TH1014; md5sum=e4c24d036dfb013e3833019f41df6aaf;
K5622x75200 base pairs  Alignments210567wgEncodeEH000124  5.7 MBbam.bai2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3472; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Il200AlignsRep2V2; md5sum=5d40a9a6df9001f077f46cd156cebfed;
K5622x75200 base pairs  Alignments210567wgEncodeEH000124  8.1 GBbam2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3472; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Il200AlignsRep2V2; md5sum=b3dda219a1abd866ed07c5f2e172077e;
K5622x75200 base pairs  Alignments110517wgEncodeEH000124  6.3 MBbam.bai2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3419; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Il200AlignsRep1V2; md5sum=7afe7f6e7fac1c2a70d09a4f2aa9eea9;
K5622x75200 base pairs  Alignments110517wgEncodeEH000124  8.5 GBbam2009-03-062009-12-06localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3419; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqK562R2x75Il200AlignsRep1V2; md5sum=305076fb990e5f81e2246e72e9f6fa56;
LHCN-M22x75200 base pairs  Signal111621wgEncodeEH001669GSM958750224 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-26; subId=6253; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Th1014Il200USigRep1V4; md5sum=835a2d56cddf8b2ac7b729b0191a10e0;
LHCN-M22x75200 base pairsDIFF_7dAlignments111622wgEncodeEH001670  6.1 MBbam.bai2011-05-052012-02-05localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3477; labVersion=myocyte; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dAlignsRep1; md5sum=08723fcc237bbc5316b70a49692a833b;
LHCN-M22x75200 base pairsDIFF_7dAlignments111622wgEncodeEH001670   11 GBbam2011-05-052012-02-05localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3477; labVersion=myocyte; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dAlignsRep1; md5sum=dff28d0040fc6e7a69c7209db0f31bfa;
LHCN-M22x75200 base pairsDIFF_7dExons Gencode V3c111622wgEncodeEH001670GSM9587517.6 MBgtf2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3595; labVersion=myocyte; mapAlgorithm=TH1014; md5sum=fdefbc1aa9bd954f86fa5cf7421bd29a;
LHCN-M22x75200 base pairsDIFF_7dFastqRd1111622wgEncodeEH001670GSM9587517.8 GBfastq.tgz2011-05-052012-02-05localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3477; labVersion=myocyte; md5sum=8f4b9bb3d698f0fabb7b3a70b6ae4f52;
LHCN-M22x75200 base pairsDIFF_7dFastqRd2111622wgEncodeEH001670GSM9587518.1 GBfastq.tgz2011-05-052012-02-05localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3477; labVersion=myocyte; md5sum=145342d9066eb0555371718ef2f7a87a;
LHCN-M22x75200 base pairsDIFF_7dGenes De Novo111622wgEncodeEH001670GSM9587511.2 MBgtf2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3595; labVersion=myocyte; mapAlgorithm=TH1014; md5sum=892bb8b8c7d74b6574e7a4b3c017a5ac;
LHCN-M22x75200 base pairsDIFF_7dGenes Gencode V3c111622wgEncodeEH001670GSM9587511.9 MBgtf2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3595; labVersion=myocyte; mapAlgorithm=TH1014; md5sum=5cbd745d2e1e2cb46fc108c2030bde88;
LHCN-M22x75200 base pairsDIFF_7dJunctions111622wgEncodeEH001670GSM9587514.8 MBbigBed2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5303; labVersion=myocyte; mapAlgorithm=TH1014; md5sum=13f6754d928fcdb1f659a70bbc72bd0a;
LHCN-M22x75200 base pairsDIFF_7dSignal111622wgEncodeEH001670GSM958751315 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-26; subId=6252; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Th1014Il200Diff7dSigRep1V4; md5sum=904e04aa6655eb361a0b09fbca0bcfae;
LHCN-M22x75200 base pairs  Transcript Gencode V3c111621wgEncodeEH001669GSM958750 13 MBgtf2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3594; labVersion=myoblast; mapAlgorithm=TH1014; md5sum=decb3b30a4aa3509422bc7cbe6c016a7;
LHCN-M22x75200 base pairs  Transcripts De novo111621wgEncodeEH001669GSM9587504.1 MBgtf2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3594; labVersion=myoblast; mapAlgorithm=TH1014; md5sum=d99631e4fa0e7c197814390ae452fcae;
LHCN-M22x75200 base pairs  TSS Gencode V3c111621wgEncodeEH001669GSM9587503.0 MBgtf2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3594; labVersion=myoblast; mapAlgorithm=TH1014; md5sum=f82df609b36300fcd0fa6ace96ece038;
LHCN-M22x75200 base pairs  Splices111621wgEncodeEH001669GSM9587502.8 MBbam.bai2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3476; labVersion=myoblast; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Il200SplicesRep1V2; md5sum=2b6a01e0f372efe76c42b838046dae9c;
LHCN-M22x75200 base pairs  Splices111621wgEncodeEH001669GSM9587501.9 GBbam2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3476; labVersion=myoblast; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Il200SplicesRep1V2; md5sum=56674d15b37e7601ac36e58d0d2f9465;
LHCN-M22x75200 base pairsDIFF_7dSplices111622wgEncodeEH001670GSM9587512.9 MBbam.bai2011-05-052012-02-05localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3477; labVersion=myocyte; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dSplicesRep1; md5sum=7bd4bac910221437abedfa6a5b767fcd;
LHCN-M22x75200 base pairsDIFF_7dSplices111622wgEncodeEH001670GSM9587512.1 GBbam2011-05-052012-02-05localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3477; labVersion=myocyte; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Il200Myc7dSplicesRep1; md5sum=7046f7c502bd88db1c32a7f114fdf858;
LHCN-M22x75200 base pairsDIFF_7dTranscripts De novo111622wgEncodeEH001670GSM9587515.0 MBgtf2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3595; labVersion=myocyte; mapAlgorithm=TH1014; md5sum=1080c969eb84ab230a888d328ac97e74;
LHCN-M22x75200 base pairsDIFF_7dTranscript Gencode V3c111622wgEncodeEH001670GSM958751 13 MBgtf2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3595; labVersion=myocyte; mapAlgorithm=TH1014; md5sum=83c021b2bfed8532039555db2c70a226;
LHCN-M22x75200 base pairsDIFF_7dTSS Gencode V3c111622wgEncodeEH001670GSM9587513.0 MBgtf2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3595; labVersion=myocyte; mapAlgorithm=TH1014; md5sum=46719f70f2f9133624dc75c189792523;
LHCN-M22x75200 base pairs  Junctions111621wgEncodeEH001669GSM9587504.5 MBbigBed2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5302; labVersion=myoblast; mapAlgorithm=TH1014; md5sum=33d0e97c21e1cf0fbf084f365dce1f62;
LHCN-M22x75200 base pairs  Genes Gencode V3c111621wgEncodeEH001669GSM9587501.9 MBgtf2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3594; labVersion=myoblast; mapAlgorithm=TH1014; md5sum=2de2d608155f773a272261a6f9319231;
LHCN-M22x75200 base pairs  Genes De Novo111621wgEncodeEH001669GSM958750957 KBgtf2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3594; labVersion=myoblast; mapAlgorithm=TH1014; md5sum=cbfe39a5cf10f833f606c842a04baafd;
LHCN-M22x75200 base pairs  FastqRd2111621wgEncodeEH001669GSM9587507.5 GBfastq.tgz2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3476; labVersion=myoblast; md5sum=ff1f9556f455944b96153dfce28e8ca2;
LHCN-M22x75200 base pairs  FastqRd1111621wgEncodeEH001669GSM9587507.2 GBfastq.tgz2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3476; labVersion=myoblast; md5sum=5e4fba08147d0f0f874891f4753d33c9;
LHCN-M22x75200 base pairs  Exons Gencode V3c111621wgEncodeEH001669GSM9587507.5 MBgtf2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3594; labVersion=myoblast; mapAlgorithm=TH1014; md5sum=513ac45f0d835dacc94411c87586e7e1;
LHCN-M22x75200 base pairs  Alignments111621wgEncodeEH001669  5.4 MBbam.bai2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3476; labVersion=myoblast; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Il200AlignsRep1V2; md5sum=5f34d180db34ce346c562c01fcc03d18;
LHCN-M22x75200 base pairs  Alignments111621wgEncodeEH001669   11 GBbam2011-04-282012-01-28localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3476; labVersion=myoblast; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqLhcnm2R2x75Il200AlignsRep1V2; md5sum=34b4380f910b706b1c3def98eeedd73b;
MCF-72x75200 base pairs  Signal312098wgEncodeEH001421GSM958745172 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6249; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep3V4; md5sum=345732a0c766765f6865f39e42fe4224;
MCF-72x75200 base pairs  Signal211582wgEncodeEH001421GSM958745161 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6250; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep2V4; md5sum=adf89737de8e79527598e10700e9e30a;
MCF-72x75200 base pairs  Signal111581wgEncodeEH001421GSM958745225 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6251; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Th1014Il200SigRep1V4; md5sum=b6ab03e286e27a798dcc9f13d187c1b0;
MCF-72x75200 base pairs  Transcript Gencode V3c312098wgEncodeEH001421GSM958745 13 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3598; mapAlgorithm=TH1014; md5sum=dff4e802de5b80bbeec6ee4f3492c9c7;
MCF-72x75200 base pairs  Transcript Gencode V3c211582wgEncodeEH001421GSM958745 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3597; mapAlgorithm=TH1014; md5sum=a84de012446172b5e33892a5a9191f83;
MCF-72x75200 base pairs  Transcript Gencode V3c111581wgEncodeEH001421GSM958745 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3596; mapAlgorithm=TH1014; md5sum=aac13a83da476a5b1c6858abc0e6fa2e;
MCF-72x75200 base pairs  Transcripts De novo312098wgEncodeEH001421GSM9587454.3 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3598; mapAlgorithm=TH1014; md5sum=added3851f237dc2abaabb68dfe617b6;
MCF-72x75200 base pairs  Transcripts De novo211582wgEncodeEH001421GSM9587453.5 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3597; mapAlgorithm=TH1014; md5sum=50fb1553a8644f2dbe0861885dcbc618;
MCF-72x75200 base pairs  Transcripts De novo111581wgEncodeEH001421GSM9587455.5 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3596; mapAlgorithm=TH1014; md5sum=f755da2fee8d800221587b17410e747d;
MCF-72x75200 base pairs  TSS Gencode V3c312098wgEncodeEH001421GSM9587453.0 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3598; mapAlgorithm=TH1014; md5sum=eb72137bc641f3bd682335840a0fe53b;
MCF-72x75200 base pairs  TSS Gencode V3c211582wgEncodeEH001421GSM9587453.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3597; mapAlgorithm=TH1014; md5sum=7b9eef2c333c49b9939012f183a2af97;
MCF-72x75200 base pairs  TSS Gencode V3c111581wgEncodeEH001421GSM9587453.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3596; mapAlgorithm=TH1014; md5sum=075e9986692317fbc3aa4724de9645f8;
MCF-72x75200 base pairs  Splices312098wgEncodeEH001421GSM9587452.7 MBbam.bai2011-04-202012-01-20localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3478; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep3V2; md5sum=c20c3a35b5f1f285af2190fcf189ac92;
MCF-72x75200 base pairs  Splices312098wgEncodeEH001421GSM9587451.1 GBbam2011-04-202012-01-20localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3478; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep3V2; md5sum=e4454727fe54f4872d50e011278a744f;
MCF-72x75200 base pairs  Splices211582wgEncodeEH001421GSM9587452.8 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3412; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep2V2; md5sum=ae0ad7c3fc1bdffb01a8663c3baf72ef;
MCF-72x75200 base pairs  Splices211582wgEncodeEH001421GSM9587451.1 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3412; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep2V2; md5sum=3b111346ba963eb5b3958e1f7161268b;
MCF-72x75200 base pairs  Splices111581wgEncodeEH001421GSM9587452.7 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3414; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep1V2; md5sum=7af9380bedc52b57b29fc33a1c16174d;
MCF-72x75200 base pairs  Splices111581wgEncodeEH001421GSM958745878 MBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3414; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200SplicesRep1V2; md5sum=de0a84aca83f09e93205822f615cf108;
MCF-72x75200 base pairs  Junctions312098wgEncodeEH001421GSM9587454.2 MBbigBed2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5306; mapAlgorithm=TH1014; md5sum=589a5a97f52aca270a29d1fb21f122b4;
MCF-72x75200 base pairs  Junctions211582wgEncodeEH001421GSM9587455.8 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5305; mapAlgorithm=TH1014; md5sum=743c6c5f06a65b0a0cddb6b1ec9058ff;
MCF-72x75200 base pairs  Junctions111581wgEncodeEH001421GSM9587454.7 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5304; mapAlgorithm=TH1014; md5sum=d33b46f5840cb2d2d6878ffc0662773e;
MCF-72x75200 base pairs  Genes Gencode V3c312098wgEncodeEH001421GSM9587451.9 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3598; mapAlgorithm=TH1014; md5sum=ad6b6f82c2f47dfb3517aaab79085c47;
MCF-72x75200 base pairs  Genes Gencode V3c211582wgEncodeEH001421GSM9587451.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3597; mapAlgorithm=TH1014; md5sum=afcc36725a0769f8d58acfb31ae630f2;
MCF-72x75200 base pairs  Genes Gencode V3c111581wgEncodeEH001421GSM9587451.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3596; mapAlgorithm=TH1014; md5sum=dbe0c9d911222cc4f8e928c8b0227cf2;
MCF-72x75200 base pairs  Genes De Novo312098wgEncodeEH001421GSM9587451.0 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3598; mapAlgorithm=TH1014; md5sum=87f2b40bf221d6fbfe081a40e0c61cc7;
MCF-72x75200 base pairs  Genes De Novo211582wgEncodeEH001421GSM958745766 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3597; mapAlgorithm=TH1014; md5sum=c86fdfaeb2ef85999cc298a6c0724dbc;
MCF-72x75200 base pairs  Genes De Novo111581wgEncodeEH001421GSM9587451.6 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3596; mapAlgorithm=TH1014; md5sum=ebeb0ce2c4f99718e20059f11ca7b791;
MCF-72x75200 base pairs  FastqRd2312098wgEncodeEH001421GSM9587454.1 GBfastq.tgz2011-04-202012-01-20localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3478; md5sum=e189d91d06a615de4e18fa8e591386c3;
MCF-72x75200 base pairs  FastqRd2211582wgEncodeEH001421GSM9587453.9 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1904; md5sum=acd6496ccd6d1785b60ead52e831c67e;
MCF-72x75200 base pairs  FastqRd2111581wgEncodeEH001421GSM9587454.3 GBfastq.tgz2010-11-182011-08-18localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-24; subId=3025; md5sum=bdf0179ed4ecd7c98b4b51da897b0f13;
MCF-72x75200 base pairs  FastqRd1312098wgEncodeEH001421GSM9587454.0 GBfastq.tgz2011-04-202012-01-20localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Mar 2012 Freeze; subId=3478; md5sum=914a451ea395a8929789c48d28f976df;
MCF-72x75200 base pairs  FastqRd1211582wgEncodeEH001421GSM9587453.9 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1904; md5sum=1f39b9e3b818f6da44dbd23ec4dace7c;
MCF-72x75200 base pairs  FastqRd1111581wgEncodeEH001421GSM9587454.3 GBfastq.tgz2010-11-182011-08-18localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-11-24; subId=3025; md5sum=b144ccab25a4ae10596a9b6d95352eb7;
MCF-72x75200 base pairs  Exons Gencode V3c312098wgEncodeEH001421GSM9587457.5 MBgtf2011-02-192011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3598; mapAlgorithm=TH1014; md5sum=786ae20b8d997c3f4637f98395c6b9bf;
MCF-72x75200 base pairs  Exons Gencode V3c211582wgEncodeEH001421GSM9587457.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3597; mapAlgorithm=TH1014; md5sum=bc56498d676d9b01a42a1685bde969ca;
MCF-72x75200 base pairs  Exons Gencode V3c111581wgEncodeEH001421GSM9587457.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3596; mapAlgorithm=TH1014; md5sum=f2d6219c0d86ddf1612a63bd7de51324;
MCF-72x75200 base pairs  Alignments312098wgEncodeEH001421  4.7 MBbam.bai2011-02-122011-11-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3478; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep3V2; md5sum=f3eba71c2153f484ca6ad2fa17cdbdd3;
MCF-72x75200 base pairs  Alignments312098wgEncodeEH001421  6.2 GBbam2011-02-122011-11-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3478; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep3V2; md5sum=d30e635c48943bd85ad061bd5eb7294b;
MCF-72x75200 base pairs  Alignments211582wgEncodeEH001421  4.4 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3412; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep2V2; md5sum=e60c5c8cb7a63612abe04a6b559657fc;
MCF-72x75200 base pairs  Alignments211582wgEncodeEH001421  5.5 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3412; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep2V2; md5sum=51a067ff282b9061fc39f1a3b98727cd;
MCF-72x75200 base pairs  Alignments111581wgEncodeEH001421  5.8 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3414; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep1V2; md5sum=98fd1fd0664b5bdafcd5dada78ec33d3;
MCF-72x75200 base pairs  Alignments111581wgEncodeEH001421  6.4 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Mar 2012 Freeze; subId=3414; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqMcf7R2x75Il200AlignsRep1V2; md5sum=bf90494743bc9877cc6bc565154485ca;
NHEK1x75DNone  Plus Raw signal111204wgEncodeEH000136GSM958741 31 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6360; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR1x75dTh1014UPlusRawRep1V4; md5sum=8c3317fbb68d7e78d707f9a2f33f50a9;
NHEK1x75DNone  Minus Raw signal111204wgEncodeEH000136GSM958741 31 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-27; subId=6360; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR1x75dTh1014UMinusRawRep1V4; md5sum=17efd764fabddeba093ed51739445c8b;
NHEK1x75DNone  Splices111204wgEncodeEH000136GSM9587412.4 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3460; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR1x75dSplicesRep1V2; md5sum=86f8b7a334ae9c930b4400fffc82f3ff;
NHEK1x75DNone  Splices111204wgEncodeEH000136GSM958741204 MBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3460; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR1x75dSplicesRep1V2; md5sum=f1cbc66c36963d1a4db9372eec0c4918;
NHEK1x75DNone  Raw data111204wgEncodeEH000136GSM9587411.9 GBfastq2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-14; subId=1483; md5sum=32a43ff3839885e0a5903102a0ff5091;
NHEK1x75DNone  Alignments111204wgEncodeEH000136  4.6 MBbam.bai2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3460; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR1x75dAlignsRep1V2; md5sum=b9cae79caf35d08a8fa38cb3f1ef9406;
NHEK1x75DNone  Alignments111204wgEncodeEH000136  1.1 GBbam2010-01-142010-10-14localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-21; subId=3460; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR1x75dAlignsRep1V2; md5sum=d5b78f643ccf7993a885d79c9ac8ff90;
NHEK2x75200 base pairs  Signal211586wgEncodeEH000131GSM958736161 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-26; subId=6247; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Th1014Il200USigRep2V4; md5sum=057a9d2d67632f22659ff41718fc1777;
NHEK2x75200 base pairs  Signal110884wgEncodeEH000131GSM958736202 MBbigWig2011-05-112012-02-11sex=U; localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-26; subId=6248; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Th1014Il200USigRep1V4; md5sum=029a4ba2638395fc44b93f5aa1927153;
NHEK2x75200 base pairs  Transcript Gencode V3c211586wgEncodeEH000131GSM958736 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3600; mapAlgorithm=TH1014; md5sum=06350ab353911a2405189c55ca9091b1;
NHEK2x75200 base pairs  Transcript Gencode V3c110884wgEncodeEH000131GSM958736 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3599; mapAlgorithm=TH1014; md5sum=174a62dd640c62963ed54a5cd38b9441;
NHEK2x75200 base pairs  Transcripts De novo211586wgEncodeEH000131GSM9587363.5 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3600; mapAlgorithm=TH1014; md5sum=a1bcc716fa6957a821a55ce405b840ff;
NHEK2x75200 base pairs  Transcripts De novo110884wgEncodeEH000131GSM9587364.2 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3599; mapAlgorithm=TH1014; md5sum=db571b5c530200f5dcdf9f7e12e1bfdf;
NHEK2x75200 base pairs  TSS Gencode V3c211586wgEncodeEH000131GSM9587363.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3600; mapAlgorithm=TH1014; md5sum=48365b825f50cf5fbeec908af6257a38;
NHEK2x75200 base pairs  TSS Gencode V3c110884wgEncodeEH000131GSM9587363.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3599; mapAlgorithm=TH1014; md5sum=7353a2823e928cbbaaeeb9985d480112;
NHEK2x75200 base pairs  Splices211586wgEncodeEH000131GSM9587362.8 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=3411; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Il200SplicesRep2V2; md5sum=fcb03c981ac9c28ced7f8741d11835cd;
NHEK2x75200 base pairs  Splices211586wgEncodeEH000131GSM9587361.1 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=3411; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Il200SplicesRep2V2; md5sum=e6ed66ee1e9173fa83317cff531e60d7;
NHEK2x75200 base pairs  Splices110884wgEncodeEH000131GSM9587362.7 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3473; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Il200SplicesRep1V2; md5sum=4145ccde9a59993af21fc29c38b350d5;
NHEK2x75200 base pairs  Splices110884wgEncodeEH000131GSM958736773 MBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3473; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Il200SplicesRep1V2; md5sum=d1419ff005feb525b8655b17c4f40e92;
NHEK2x75200 base pairs  Junctions211586wgEncodeEH000131GSM9587364.4 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5308; mapAlgorithm=TH1014; md5sum=02403bb5416a0dfe63316e135eb1cb3d;
NHEK2x75200 base pairs  Junctions110884wgEncodeEH000131GSM9587364.3 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5307; mapAlgorithm=TH1014; md5sum=802aa5292721eabbea4ca9546809aeab;
NHEK2x75200 base pairs  Genes Gencode V3c211586wgEncodeEH000131GSM9587361.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3600; mapAlgorithm=TH1014; md5sum=de24189c34a6bfa67b2460f3b9c8219b;
NHEK2x75200 base pairs  Genes Gencode V3c110884wgEncodeEH000131GSM9587361.9 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3599; mapAlgorithm=TH1014; md5sum=ea075d134690d310d20aaea4d40577ab;
NHEK2x75200 base pairs  Genes De Novo211586wgEncodeEH000131GSM958736769 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3600; mapAlgorithm=TH1014; md5sum=96bba20ad5210fdec4a4b986fe37de66;
NHEK2x75200 base pairs  Genes De Novo110884wgEncodeEH000131GSM9587361.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3599; mapAlgorithm=TH1014; md5sum=245f344377962af4830d09251ca00388;
NHEK2x75200 base pairs  FastqRd2211586wgEncodeEH000131GSM9587363.9 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=1909; md5sum=8993a7d4f97d295220dc53d619d4c7d9;
NHEK2x75200 base pairs  FastqRd2110884wgEncodeEH000131GSM9587364.0 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1493; md5sum=dac4b97033fb7e3a4d04349e586049b3;
NHEK2x75200 base pairs  FastqRd1211586wgEncodeEH000131GSM9587363.8 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=1909; md5sum=a18d97f8ba14fc7574c0e84db27e508c;
NHEK2x75200 base pairs  FastqRd1110884wgEncodeEH000131GSM9587364.4 GBfastq.tgz2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-01-13; subId=1493; md5sum=a9a01674724b6d8eeba00af97fee0603;
NHEK2x75200 base pairs  Exons Gencode V3c211586wgEncodeEH000131GSM9587367.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3600; mapAlgorithm=TH1014; md5sum=09c00147d5dd322206bc0851cc4e636d;
NHEK2x75200 base pairs  Exons Gencode V3c110884wgEncodeEH000131GSM9587367.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; subId=3599; mapAlgorithm=TH1014; md5sum=eb7e26f852c345345a397a70a5c4e730;
NHEK2x75200 base pairs  Alignments211586wgEncodeEH000131  4.5 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=3411; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Il200AlignsRep2V2; md5sum=8252bf9e9d7bbdc0ec36bb96bd2eefa4;
NHEK2x75200 base pairs  Alignments211586wgEncodeEH000131  5.4 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=3411; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Il200AlignsRep2V2; md5sum=102fb4b6454f275f27c3667541cefdda;
NHEK2x75200 base pairs  Alignments110884wgEncodeEH000131  5.6 MBbam.bai2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3473; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Il200AlignsRep1V2; md5sum=2ed8cafe496bf68745fb3fe6b85e9177;
NHEK2x75200 base pairs  Alignments110884wgEncodeEH000131  5.6 GBbam2010-01-132010-10-12localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2011-01-22; subId=3473; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhekR2x75Il200AlignsRep1V2; md5sum=82eaf4aa0f4474ff6123a494a4e7bc3c;
NHLF2x75200 base pairs  Signal211588wgEncodeEH001422GSM958746155 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6245; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Th1014Il200SigRep2V4; md5sum=72612280557b555f369c297c1fde1fc9;
NHLF2x75200 base pairs  Signal111587wgEncodeEH001422GSM958746158 MBbigWig2011-05-112012-02-11localization=cell; rnaExtract=longPolyA; submittedDataVersion=V4 - Previous version off by one base; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2012-03-23; subId=6246; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Th1014Il200SigRep1V4; md5sum=64697dfe0c39ca6d4af451fdfbb72533;
NHLF2x75200 base pairs  Transcript Gencode V3c211588wgEncodeEH001422GSM958746 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3574; mapAlgorithm=TH1014; md5sum=d7523997e302832a5dbb19aea0728537;
NHLF2x75200 base pairs  Transcript Gencode V3c111587wgEncodeEH001422GSM958746 13 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3573; mapAlgorithm=TH1014; md5sum=24e4b8522dca509c9dd5f55edc62212c;
NHLF2x75200 base pairs  Transcripts De novo211588wgEncodeEH001422GSM9587463.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3574; mapAlgorithm=TH1014; md5sum=03038cc8ea8cbde2480d2073f0d34fde;
NHLF2x75200 base pairs  Transcripts De novo111587wgEncodeEH001422GSM9587463.4 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3573; mapAlgorithm=TH1014; md5sum=e21f3d9751d46fd577edec296b7e04ec;
NHLF2x75200 base pairs  TSS Gencode V3c211588wgEncodeEH001422GSM9587463.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3574; mapAlgorithm=TH1014; md5sum=0206d58bc1036fa8a4cb7ac76bed1864;
NHLF2x75200 base pairs  TSS Gencode V3c111587wgEncodeEH001422GSM9587463.1 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3573; mapAlgorithm=TH1014; md5sum=287901b7da02a94b705c6d536abd1581;
NHLF2x75200 base pairs  Splices211588wgEncodeEH001422GSM9587462.7 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3440; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Il200SplicesRep2V2; md5sum=623034a1e60a2b5864eebb44a7a0b3bf;
NHLF2x75200 base pairs  Splices211588wgEncodeEH001422GSM9587461.0 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3440; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Il200SplicesRep2V2; md5sum=65903ccbdb793fb385541a44782d12d0;
NHLF2x75200 base pairs  Splices111587wgEncodeEH001422GSM9587462.7 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3413; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Il200SplicesRep1V2; md5sum=fa2fad06ba5c4ff5e93788adfafd0283;
NHLF2x75200 base pairs  Splices111587wgEncodeEH001422GSM9587461.0 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3413; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Il200SplicesRep1V2; md5sum=0819108916df1d413755b208fe988811;
NHLF2x75200 base pairs  Junctions211588wgEncodeEH001422GSM9587464.2 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5310; mapAlgorithm=TH1014; md5sum=ffbd43fb174e9481ed382d9f1923843e;
NHLF2x75200 base pairs  Junctions111587wgEncodeEH001422GSM9587464.3 MBbigBed2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-12-22; subId=5309; mapAlgorithm=TH1014; md5sum=8a8dfa5a844d17c8539cf42c10e4a5e2;
NHLF2x75200 base pairs  Genes Gencode V3c211588wgEncodeEH001422GSM9587461.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3574; mapAlgorithm=TH1014; md5sum=3c6f8d34d1be105456407328e39751a7;
NHLF2x75200 base pairs  Genes Gencode V3c111587wgEncodeEH001422GSM9587461.8 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3573; mapAlgorithm=TH1014; md5sum=935e30c092cdb0f5ed48d76ff530f7d3;
NHLF2x75200 base pairs  Genes De Novo211588wgEncodeEH001422GSM958746746 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3574; mapAlgorithm=TH1014; md5sum=47edf03671d311a7ffab28d84417c02a;
NHLF2x75200 base pairs  Genes De Novo111587wgEncodeEH001422GSM958746755 KBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3573; mapAlgorithm=TH1014; md5sum=3174b2bf67e53030b6b962b5b37252d4;
NHLF2x75200 base pairs  FastqRd2211588wgEncodeEH001422GSM9587463.8 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1905; md5sum=a5b70601cb79b746d58606f99fd2e9d6;
NHLF2x75200 base pairs  FastqRd2111587wgEncodeEH001422GSM9587463.8 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1906; md5sum=c50d9844e78a1a66d9e88acaf33e3948;
NHLF2x75200 base pairs  FastqRd1211588wgEncodeEH001422GSM9587463.7 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1905; md5sum=849b263f0ab8b5cc9c09820d90bcb35f;
NHLF2x75200 base pairs  FastqRd1111587wgEncodeEH001422GSM9587463.7 GBfastq.tgz2010-07-132011-04-12localization=cell; rnaExtract=longPolyA; dataVersion=ENCODE Jan 2011 Freeze; subId=1906; md5sum=9ad7e3ac8569e7c4b88880dca57a9d48;
NHLF2x75200 base pairs  Exons Gencode V3c211588wgEncodeEH001422GSM9587467.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3574; mapAlgorithm=TH1014; md5sum=f3da2830e35162d5ca9a311c40dfbca5;
NHLF2x75200 base pairs  Exons Gencode V3c111587wgEncodeEH001422GSM9587467.7 MBgtf2011-02-182011-11-18localization=cell; rnaExtract=longPolyA; submittedDataVersion=V3 - New Elements Formats; dataVersion=ENCODE Mar 2012 Freeze; subId=3573; mapAlgorithm=TH1014; md5sum=0cebca8f15c7d6aed56ad9033e7ab28f;
NHLF2x75200 base pairs  Alignments211588wgEncodeEH001422  4.4 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3440; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Il200AlignsRep2V2; md5sum=3a4011ed4bce8f730871979e82e1e6f9;
NHLF2x75200 base pairs  Alignments211588wgEncodeEH001422  5.3 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3440; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Il200AlignsRep2V2; md5sum=698eb744de450f19a5859a4b0b31c20e;
NHLF2x75200 base pairs  Alignments111587wgEncodeEH001422  4.1 MBbam.bai2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3413; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Il200AlignsRep1V2; md5sum=fbd5d973c6c8606a71948628431a22a5;
NHLF2x75200 base pairs  Alignments111587wgEncodeEH001422  5.2 GBbam2011-01-222011-10-21localization=cell; rnaExtract=longPolyA; submittedDataVersion=V2 - A better mapping technique.; dataVersion=ENCODE Jan 2011 Freeze; subId=3413; mapAlgorithm=TH1014; tableName=wgEncodeCaltechRnaSeqNhlfR2x75Il200AlignsRep1V2; md5sum=562c779768d207625984bf7fb72d149a;
    571 filesRestriction Policy

Description

This track was produced as part of the ENCODE Project. RNA-seq is a method for mapping and quantifying the transcriptome of any organism that has a genomic DNA sequence assembly. RNA-seq was performed by reverse-transcribing an RNA sample into cDNA, followed by high-throughput DNA sequencing, which was done on an Illumina Genome Analyzer (GAI or GAIIx) (Mortazavi et al., 2008). The transcriptome measurements shown on these tracks were performed on polyA selected RNA from total cellular RNA using two different protocols: one that preserves information about which strand the read is coming from and one that does not. Due to the specifics of the enzymology of library construction, gene and transcript quantification is more accurate based on the non-strand-specific protocol, while the strand-specific protocol is useful for assigning strandedness, but in general less reliable for quantification.

Non-strand-specific Protocol (deep "reference" transcriptome measurements, 2x75 bp reads)

PolyA-selected RNA was fragmented by magnesium-catalyzed hydrolysis, converted into cDNA by random priming and then amplified. Data were produced in two formats: single reads, each of which came from one end of a cDNA molecule, and paired-end reads, which were obtained as pairs from both ends of cDNAs. This RNA-seq protocol does not specify the coding strand. As a result, there is ambiguity at loci where both strands are transcribed. The "randomly primed" reverse transcription is, apparently, not fully random. This is inferred from a sequence bias in the first residues of the read population, and this likely contributes to observed unevenness in sequence coverage across transcripts.

Strand-specific Protocol (1x75 bp reads)

PolyA-selected RNA was fragmented by magnesium-catalyzed hydrolysis. A set of 3' and 5' adapters were ligated to the 3' and 5' ends of the fragments, respectively. The resulting RNA molecules were converted to cDNA and amplified. This RNA-seq protocol does specify the coding strand as each read is in the same 5'-3' orientation as the original RNA strand. As a result, loci where both strands are transcribed can be disambiguated. However, RNA ligation is an inherently biased process and as a result, greater unevenness in sequence coverage across transcripts is observed compared to the non-strand-specific data, and quantification is less accurate.

Data Analysis

Reads were aligned to the hg19 human reference genome using TopHat (Trapnell et al., 2009), a program specifically designed to align RNA-seq reads and discover splice junctions de novo. Cufflinks (Trapnell et al., 2010), a de novo transcript assembly and quantification software package, was run on the TopHat alignments to discover and quantify novel transcripts and to obtain transcript expression estimates based on the GENCODE annotation. All sequence files, alignments, gene and transcript models and expression estimates files are available for download.

Display Conventions and Configuration

This track is a multi-view composite track that contains multiple data types (views). For each view, there are multiple subtracks that display individually on the browser. Instructions for configuring multi-view tracks are here. The following views are in this track:

Alignments
The Alignments view shows reads aligned to the genome. Alignments are colored by cell type. The tags used in this file are: NH XS CP NM CC. The 'XS' custom tag indicates the sense/anti-sense of the strand. See the Bowtie Manual (Langmead et al., 2009) for more information about the SAM Bowtie output (including other tags) and the SAM Format Specification for more information on the SAM/BAM file format.

For Stranded Data (1x75)

Plus Raw Signal (only for stranded data)
Density graph (wiggle) of signal enrichment based on a normalized aligned read density (Read Per Million, RPM) for reads aligning to the forward strand.
Minus Raw Signal (only for stranded data)
Density graph (wiggle) of signal enrichment based on a normalized aligned read density (Read Per Million, RPM) for reads aligning to the reverse strand. Minus strand score is multiplied by -1 for display purposes so that data can be viewed around an axis.

For Paired-End Non-Stranded Data (2x75)

Raw Signal (only for paired-end data)
Density graph (wiggle) of signal enrichment based on a normalized aligned read density (Read Per Million, RPM). The RPM measure assists in visualizing the relative amount of a given transcript across multiple samples. A separate track for the forward (plus) and reverse (minus) strands are provided for strand-specific data.
Splice Sites
Subset of aligned reads that crosses splice junctions.

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

Methods

Experimental Procedures

Cells were grown according to the approved ENCODE cell culture protocols except for H1-hESC for which frozen cell pellets were purchased from Cellular Dynamics. Cells were lysed in RLT buffer (Qiagen RNeasy kit) and processed on RNeasy midi columns according to the manufacturer's protocol, with the inclusion of the "on-column" DNase digestion step to remove residual genomic DNA.

A quantity of 75 µg of total RNA was selected twice with oligo-dT beads (Dynal) according to the manufacturer's protocol to isolate mRNA from each of the preparations. For 2x75 bp non-stranded RNA-seq, 100 ng of mRNA was then processed according to the protocol in Mortazavi et al. (2008), and prepared for sequencing on the Genome Analyzer flow cell according to the protocol for the ChIP-seq DNA genomic DNA kit (Illumina). The majority of paired-end libraries were size-selected around 200 bp (fragment length) with the exception of a few additional replicates that were size-selected at 400 bp with the specific intent to investigate the effect of fragment length on results. Strand-specific RNA-seq libraries were prepared from 100 ng of mRNA from the same preparation following Illumina's Strand-Specific RNA-seq protocol.

Libraries were sequenced with an Illumina Genome Analyzer I or an Illumina Genome Analyzer IIx according to the manufacturer's recommendations. Reads of 75 bp length were obtained, single-end for directional, strand-specific libraries (1x75D) and paired-end for non-strand-specific libraries (2x75).

Data Processing and Analysis

Reads were mapped to the reference human genome (version hg19), with or without the Y chromosome, depending on the sex of the cell line, and without the random chromosomes and haplotypes in all cases, using TopHat (version 1.0.14). TopHat was used with default settings with the exception of specifying an empirically determined mean inner-mate distance. After mapping reads to the genome and identifying splice junctions, the data were further analyzed using the transcript assembly and quantification software Cufflinks (version 0.9.3) using the sequence bias detection and correction option. Cufflinks was used in two modes: 1) expression for genes and individual transcripts was quantified based on the GENCODE annotation, for both versions v3c and v4 of GENCODE GRCh37; 2) Cufflinks was run in de novo transcript assembly and quantification mode to obtain candidate novel transcript and gene models and expression estimates for them.

Downloadable Files

The following files can be found on the downloads page:

.fastq - Raw sequence files in fastq format with phred33 quality scores.
Junctions.bedRnaElements - A BED file containing TopHat-defined splice junctions.
TranscriptDeNovo.gtf - A GTF file containing transcript models and expression estimates in FPKM (Fragments Per Kilobase per Million reads) produced by Cufflinks in de novo mode.
TranscriptGencV3c.gtf - Expression level estimates at the transcript level for the GENCODE GRCh37.v3c annotation in GTF format.
GenesDeNovo.gtf - Expression estimates for genes defined by Cufflinks in de novo mode in GTF format.
GeneGencV3c.gtf - Expression level estimates at the gene level for the GENCODE GRCh37.v3c annotation in GTF format.
ExonGencV3c.gtf - Expression level estimates for GENCODE GRCh37.v3c exons in GTF format derived by summing the expression levels in FPKM for all transcripts containing a given exon.
TSS.gtf - Expression level estimates for GENCODE GRCh37.v3c transcription start sites (TSS) in GTF format derived by summing the expression levels in FPKM for all transcripts originating from a given TSS.

Verification

  • Known exon maps as displayed on the genome browser are confirmed by the alignment of sequence reads.
  • Known spliced exons are detected at the expected frequency for transcripts of given abundance.
  • Linear range detection of spiked-in RNA transcripts from Arabidopsis and phage lambda over 5 orders of magnitude.
  • Endpoint RT-PCR confirms presence of selected 3' UTR extensions.
  • Correlation to published microarray data r = 0.62.

Release Notes

This is release 4 (August 2012). Fastq files for GM12892, GM12891 and K562 (R1x75) were replaced after errors were found in the GEO submission process.

Credits

Wold Group: Ali Mortazavi, Brian Williams, Georgi Marinov, Diane Trout, Brandon King, Ken McCue, Lorian Schaeffer.

Myers Group: Norma Neff, Florencia Pauli, Fan Zhang, Tim Reddy, Rami Rauch, Chris Partridge.

Illumina gene expression group: Gary Schroth, Shujun Luo, Eric Vermaas.

TopHat/Cufflinks development: Cole Trapnell, Lior Pachter, Steven Salzberg.

Contacts: Georgi Marinov (data coordination/informatics/experimental), Diane Trout (informatics) and Brian Williams (experimental).

References

Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10(3):R25.

Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008 Jul;5(7):621-8.

Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009 May 1;25(9):1105-11.

Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010 May;28(5):511-5.

Data Release Policy

Data users may freely use ENCODE data, but may not, without prior consent, submit publications that use an unpublished ENCODE dataset until nine months following the release of the dataset. This date is listed in the Restricted Until column, above. The full data release policy for ENCODE is available here.