#####################################################
track multiWig1
type bigWig
container multiWig
shortLabel Ex. multiWig container
longLabel This multiWig overlay track graphs points from three bigWig files.
visibility full
aggregate transparentOverlay
showSubtrackColorOnUi on
maxHeightPixels 500:100:8
viewLimits 1:20
priority 1
html examplePage

                track wig1
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/wgEncodeCshlLongRnaSeqA549CellLongnonpolyaMinusRawSigRep1.bigWig
                shortLabel Overlay bigWig1
                longLabel This is an example bigWig1 displaying Raw Signal from the ENCODE RNA-seq CSHL track, graphing just points as default.
                parent multiWig1
                graphTypeDefault points
                type bigWig
                color 255,0,0

                track wig2
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/wgEncodeCshlLongRnaSeqA549CellLongnonpolyaPlusRawSigRep1.bigWig
                shortLabel Overlay bigWig2
                longLabel This is an example bigWig2 displaying Raw Signal from the ENCODE RNA-seq CSHL track, graphing just points as default.
                graphTypeDefault points
                parent multiWig1
                type bigWig
                color 0,255,0

                track wig3
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaPlusRawSigRep1.bigWig
                shortLabel Overlay bigWig3
                longLabel This is an example bigWig3 displaying Raw Signal from the ENCODE RNA-seq CSHL track, graphing just points as default. 
                graphTypeDefault points
                parent multiWig1
                type bigWig
                color 95,158,160

########################################################
track composite1
type bam
compositeTrack on
shortLabel Ex. compositeTrack on
longLabel This composite track groups related bam subtracks together.
visibility dense
priority 2
html examplePage


                track composite1Bam1
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnase8988tAlnRep1.bam
                shortLabel Example BAM 1
                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track.
                parent composite1 off
                type bam

                track composite1Bam2
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseAdultcd4th0AlnRep1.bam
                shortLabel Example BAM 2
                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track.
                parent composite1 off
                type bam

                track composite1Bam3
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseFibroblgm03348AlnRep2.bam
                shortLabel Example BAM 3
                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track.
                parent composite1 off
                type bam

                track composite1Bam4
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseK562G2mphaseAlnRep3.bam
                shortLabel Example BAM 4
                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track.
                parent composite1 on
                type bam

                track composite1Bam5
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseProgfibAlnRep2.bam
                shortLabel Example BAM 5
                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track.
                parent composite1 on
                type bam

                track composite1Bam6
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseOsteoblAlnRep1.bam
                shortLabel Example BAM 6
                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track.
                parent composite1 on
                type bam

                track composite1Bam7
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseT47dEst10nm30mAlnRep2.bam
                shortLabel Example BAM 7
                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track.
                parent composite1 on
                type bam

                track composite1Bam8
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseUrothelUt189AlnRep1V2.bam
                shortLabel Example BAM 8
                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track.
                parent composite1 on
                type bam


#########################################################
track superTrack1
superTrack on show
shortLabel  Ex. superTrack on
longLabel A super-track of related data of various types together: individual, multiWig, and composite
html examplePage

                track st1bigWig1
                parent superTrack1
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/wgEncodeCshlLongRnaSeqA549CellLongnonpolyaPlusRawSigRep2.bigWig
                shortLabel bigWig example inside a super-track
                longLabel This super-track contained bigWig file is an example from the ENCODE RNA-seq CSHL track
                type bigWig
                visibility full
                maxHeightPixels 500:15:8
                viewLimits 1:10
                priority 10

                track st1bam1
                parent superTrack1
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/wgEncodeCshlLongRnaSeqA549CellPapAlnRep1.bam
                shortLabel BAM example inside super-track
                longLabel This super-track contained BAM file is an example from the ENCODE RNA-seq CSHL track
                type bam
                visibility dense
                priority 20

                track st1bigBed1
                parent superTrack1
                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCaltechRnaSeq/wgEncodeCaltechRnaSeqGm12892R2x75Il200JunctionsRep3V3.bigBed
                shortLabel bigBed example inside super-track
                longLabel This super-track contained bigBed file is an example from the ENCODE RNA-seq Caltech track
                type bigBed
                visibility squish
                priority 30

                track st1vcf1
                parent superTrack1
                bigDataUrl http://hgdownload.cse.ucsc.edu/gbdb/hg19/1000Genomes/ALL.chr2.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz
                shortLabel chr2 VCF example inside super-track
                longLabel This super-track contained chr2 VCF file is an example from the 1000 Genomes Phase 1 Integrated Variant Calls track
                type vcfTabix
                visibility hide
                priority 40

                track st1multiWig1
                parent superTrack1
                container multiWig      
                shortLabel MulitWig example inside super-track
                longLabel This super-track contained transparent overlay multWig feature uses three bigWig files from the ENCODE RNA-seq CSHL track
                type bigWig
                visibility full
                aggregate transparentOverlay
                showSubtrackColorOnUi on
                maxHeightPixels 500:50:8
                priority 50

                                track st1wg1wig1
                                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/wgEncodeCshlLongRnaSeqA549CellLongnonpolyaMinusRawSigRep1.bigWig
                                shortLabel Overlay bigWig1
                                longLabel This is an example bigWig1 displaying Raw Signal from the ENCODE RNA-seq CSHL track, grouped inside a super-track.
                                parent st1multiWig1
                                type bigWig
                                color 255,0,0

                                track st1mw1wig2
                                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/wgEncodeCshlLongRnaSeqA549CellLongnonpolyaPlusRawSigRep1.bigWig
                                shortLabel Overlay bigWig2
                                longLabel This is an example bigWig2 displaying Raw Signal from the ENCODE RNA-seq CSHL track, grouped inside a super-track.
                                parent st1multiWig1
                                type bigWig
                                color 0,255,0

                                track st1mw1wig3
                                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeCshlLongRnaSeq/wgEncodeCshlLongRnaSeqAg04450CellLongnonpolyaPlusRawSigRep1.bigWig
                                shortLabel Overlay bigWig3
                                longLabel This is an example bigWig3 displaying Raw Signal from the ENCODE RNA-seq CSHL track, grouped inside a super-track.
                                parent st1multiWig1
                                type bigWig
                                color 95,158,160


               track st1composite1
               parent superTrack1
               compositeTrack on
               shortLabel Ex. ST Composite
               longLabel This super-track contained composite track example groups related BAM information together into subtracks.
               visibility dense
               type bam
               priority 60

                                track st1composite1Bam1
                                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnase8988tAlnRep1.bam
                                shortLabel Example BAM 1
                                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track, grouped inside a super-track.
                                parent st1composite1 on
                                type bam

                                track st1composite1Bam2
                                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseAdultcd4th0AlnRep1.bam
                                shortLabel Example BAM 2
                                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track, grouped inside a super-track.
                                parent st1composite1 on
                                type bam

                                track st1composite1Bam3
                                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseFibroblgm03348AlnRep2.bam
                                shortLabel Example BAM 3
                                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track, grouped inside a super-track.
                                parent st1composite1 on
                                type bam

                                track st1composite1Bam4
                                bigDataUrl http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase/wgEncodeOpenChromDnaseK562G2mphaseAlnRep3.bam
                                shortLabel Example BAM 4
                                longLabel This is an example BAM in a composite track from the ENCODE Open Chrom DNase track, grouped inside a super-track.
                                parent st1composite1 off
                                type bam